Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SSUD9_RS00840 | Genome accession | NC_017620 |
| Coordinates | 129566..130519 (+) | Length | 317 a.a. |
| NCBI ID | WP_014636755.1 | Uniprot ID | - |
| Organism | Streptococcus suis D9 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 124566..135519
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSUD9_RS00800 (SSUD9_0134) | - | 124829..125779 (-) | 951 | WP_014636751.1 | S66 family peptidase | - |
| SSUD9_RS00805 (SSUD9_0135) | comYA | 125865..126815 (+) | 951 | WP_002936562.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SSUD9_RS00810 (SSUD9_0136) | comYB | 126727..127764 (+) | 1038 | WP_255195823.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SSUD9_RS00815 (SSUD9_0137) | comYC | 127766..128047 (+) | 282 | WP_002936550.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SSUD9_RS00820 (SSUD9_0138) | comGD | 128028..128435 (+) | 408 | WP_014636753.1 | competence type IV pilus minor pilin ComGD | - |
| SSUD9_RS00825 (SSUD9_0139) | comYE | 128407..128700 (+) | 294 | WP_002936548.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| SSUD9_RS00830 (SSUD9_0140) | comGF/cglF | 128687..129121 (+) | 435 | WP_002936547.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SSUD9_RS00835 (SSUD9_0141) | comGG | 129099..129509 (+) | 411 | WP_002936546.1 | competence type IV pilus minor pilin ComGG | - |
| SSUD9_RS00840 (SSUD9_0142) | comYH | 129566..130519 (+) | 954 | WP_014636755.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SSUD9_RS00845 (SSUD9_0143) | - | 130569..131756 (+) | 1188 | WP_002936543.1 | acetate kinase | - |
| SSUD9_RS00850 (SSUD9_0144) | - | 132071..132622 (+) | 552 | WP_014636756.1 | folate family ECF transporter S component | - |
| SSUD9_RS00855 (SSUD9_0145) | - | 132676..133932 (+) | 1257 | WP_002936539.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| SSUD9_RS00860 (SSUD9_0146) | pepA | 133977..135038 (-) | 1062 | WP_002936538.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35697.74 Da Isoelectric Point: 4.3950
>NTDB_id=49722 SSUD9_RS00840 WP_014636755.1 129566..130519(+) (comYH) [Streptococcus suis D9]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVANQHETDLVVNNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKDLDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGIAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVANQHETDLVVNNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKDLDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGIAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=49722 SSUD9_RS00840 WP_014636755.1 129566..130519(+) (comYH) [Streptococcus suis D9]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACCATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTAATCAGCATGAGACGGACCTTGTTGTCAATAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTACAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTAGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTTAACGCCAGTCAGAAAG
ACTTGGACTATCTGGGGATTGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGCTATCAGGTCGCCAGCCCAAATGAACATACCTACGCCCATCATTTACTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCATTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGGTCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACCATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTAATCAGCATGAGACGGACCTTGTTGTCAATAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTACAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTAGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTTAACGCCAGTCAGAAAG
ACTTGGACTATCTGGGGATTGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGCTATCAGGTCGCCAGCCCAAATGAACATACCTACGCCCATCATTTACTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCATTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGGTCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
60.252 |
100 |
0.603 |
| comYH | Streptococcus mutans UA159 |
59.937 |
100 |
0.599 |