Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IH404_RS27680 Genome accession   NZ_CP063780
Coordinates   6296640..6298136 (+) Length   498 a.a.
NCBI ID   WP_005792457.1    Uniprot ID   A0A7S7S4U3
Organism   Pseudomonas sp. OST1909     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6291640..6303136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IH404_RS27650 (IH404_27650) - 6291678..6292373 (+) 696 WP_005792450.1 HAD-IA family hydrolase -
  IH404_RS27655 (IH404_27655) sutA 6292501..6292833 (-) 333 WP_005792452.1 transcriptional regulator SutA -
  IH404_RS27660 (IH404_27660) - 6292936..6293361 (-) 426 WP_005792453.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  IH404_RS27665 (IH404_27665) - 6293571..6294908 (-) 1338 WP_005792454.1 ammonium transporter -
  IH404_RS27670 (IH404_27670) glnK 6294943..6295281 (-) 339 WP_005792455.1 P-II family nitrogen regulator -
  IH404_RS27675 (IH404_27675) - 6295704..6295967 (+) 264 WP_005792456.1 accessory factor UbiK family protein -
  IH404_RS27680 (IH404_27680) comM 6296640..6298136 (+) 1497 WP_005792457.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IH404_RS27685 (IH404_27685) - 6298143..6298718 (-) 576 WP_005792458.1 TetR family transcriptional regulator C-terminal domain-containing protein -
  IH404_RS27690 (IH404_27690) - 6298831..6299745 (+) 915 WP_194439574.1 ABC transporter six-transmembrane domain-containing protein -
  IH404_RS27695 (IH404_27695) - 6299749..6301725 (-) 1977 WP_005792460.1 methyl-accepting chemotaxis protein -
  IH404_RS27700 (IH404_27700) - 6301904..6302824 (-) 921 WP_005792461.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53416.57 Da        Isoelectric Point: 8.1015

>NTDB_id=496789 IH404_RS27680 WP_005792457.1 6296640..6298136(+) (comM) [Pseudomonas sp. OST1909]
MSLAIVHSRAQVGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYRSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPNRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREVTALSPSQQA
GDTTAQASAQVAQARERQHQRQGCANAFLDLPRLREHCQLTKADESWLESACERLTLSLRAAHRLLKVARTLADLEQVEG
IARHHLAEALQYRPAAHG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=496789 IH404_RS27680 WP_005792457.1 6296640..6298136(+) (comM) [Pseudomonas sp. OST1909]
ATGTCCCTCGCTATCGTGCACAGCCGCGCCCAGGTCGGCGTCGAAGCCCCCGCCGTCACCGTTGAAGTGCATATGGCCAA
TGGCTTGCCATCGCTGACGCTGGTGGGCCTGCCGGAAACTGCAGTAAAGGAAAGCAAGGACCGCGTTCGCAGCGCCATTC
TCAACTCGGCGCTGCAATACCCGGCCCGGCGCATCACCCTCAATCTCGCGCCCGCCGACCTACCCAAGGACGGCGGGCGC
TTTGATCTGGCGATTGCCCTGGGGATCCTGGCGGCCAGTGTGCAAGTGCCGGCCTTGATGCTTGATGACGTGGAGTGCCT
TGGTGAGTTGGCGTTATCGGGCGAGGTACGGGCGGTGAAGGGTGTGTTGCCGGCCGCGCTTGCGGCGCGCAAGGCCGGGC
GCACCGTGATAGTGCCCAGGGCCAATGCCGAGGAAGCCTGCCTGGCGTCGGGGCTCAAAGTGATTGCGGTGGACCACCTG
CTGCAAGTGGTGGCGCACCTTAATGGGCATGTGCCGATTGAGCCCTACAGGTCCGACGGCTTGCTGTACTTGAACAAGCC
TTACCCGGACCTGAGTGAAGTGCAGGGCCAACTGGCAGCCAAGCGTGCCTTGCTGATTGCGGCGGCCGGCGCACATAACC
TGCTGTTCAGCGGGCCACCCGGTACCGGCAAGACCCTGTTGGCCAGCCGCCTGCCGGGCTTGCTGCCACCGCTGAGCGAG
CAGGAGGCGCTGGAAGTGGCCGCGATCCAATCCGTGGTCAGCCTGGCCCCCCTTAGCCATTGGCCTAATCGCCCGTTTCG
CCAGCCGCACCACTCGGCATCCGGCCCGGCGCTGGTGGGTGGCGGCTCGAAGCCGCAGCCGGGGGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTGGATGAGCTGCCGGAATTTGATCGCAAGGTACTGGAGGTGCTGCGCGAGCCATTGGAGTCG
GGGCATATCGTGATCTCCCGAGCCAGGGACCGGGTGAGTTTCCCGGCACGCTTCCAGTTGGTCGCGGCCATGAACCCCTG
CCCGTGCGGCTACATGGGCGAACCCAGCGGGCGTTGTCGGTGCACGCCGGAGCAGATACAGCGCTATCGCAACAAGCTAT
CCGGGCCGCTGCTGGACCGGATTGATTTGCACCTGACAGTCGCCCGGGAGGTCACTGCGCTGAGCCCCTCCCAACAGGCC
GGTGACACCACCGCGCAAGCGTCCGCCCAGGTGGCGCAAGCCCGTGAACGCCAGCACCAGCGCCAGGGTTGTGCCAATGC
ATTCCTCGATCTGCCACGGCTACGCGAACACTGCCAGTTGACCAAAGCCGATGAAAGCTGGCTGGAAAGCGCGTGCGAAC
GACTGACATTATCGCTGCGTGCAGCCCATCGGTTGCTCAAGGTGGCTCGCACCCTGGCGGACCTTGAGCAAGTGGAAGGC
ATCGCCCGCCATCATTTGGCGGAGGCGCTGCAGTACCGACCAGCCGCTCATGGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7S4U3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.768

99.398

0.564
  comM Glaesserella parasuis strain SC1401

55.689

100

0.56
  comM Vibrio cholerae strain A1552

56.364

99.398

0.56
  comM Haemophilus influenzae Rd KW20

55

100

0.552
  comM Legionella pneumophila str. Paris

50.4

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.4

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.429

100

0.47