Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IQ281_RS04975 Genome accession   NZ_CP063773
Coordinates   1088606..1090132 (+) Length   508 a.a.
NCBI ID   WP_180779396.1    Uniprot ID   -
Organism   Pectobacterium carotovorum subsp. carotovorum PCCS1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1083606..1095132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ281_RS04955 - 1085041..1085967 (-) 927 WP_015842124.1 branched-chain amino acid transaminase -
  IQ281_RS04960 ilvM 1085995..1086255 (-) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  IQ281_RS04965 ilvG 1086313..1087959 (-) 1647 WP_194431269.1 acetolactate synthase 2 catalytic subunit -
  IQ281_RS04970 ilvL 1088100..1088198 (-) 99 WP_071531109.1 ilv operon leader peptide -
  IQ281_RS04975 comM 1088606..1090132 (+) 1527 WP_180779396.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IQ281_RS04980 - 1090189..1090527 (-) 339 WP_014701822.1 DUF413 domain-containing protein -
  IQ281_RS04985 hdfR 1090648..1091475 (+) 828 WP_015842127.1 HTH-type transcriptional regulator HdfR -
  IQ281_RS04990 yjfF 1091497..1092459 (-) 963 WP_180779397.1 galactofuranose ABC transporter, permease protein YjfF -
  IQ281_RS04995 ytfT 1092459..1093469 (-) 1011 WP_323744247.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  IQ281_RS05000 ytfR 1093456..1094976 (-) 1521 WP_194431270.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55412.99 Da        Isoelectric Point: 6.8238

>NTDB_id=496718 IQ281_RS04975 WP_180779396.1 1088606..1090132(+) (comM) [Pectobacterium carotovorum subsp. carotovorum PCCS1]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LEVCAFLSGEEELLSCSDIALAPQSEEDALDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQRH
QGESSATIRERVLIARQIQLKRANKINALLTSREIEQHCALEAPDAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRK
SIERKHLAEALSYRSMDRLLIQLHRSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=496718 IQ281_RS04975 WP_180779396.1 1088606..1090132(+) (comM) [Pectobacterium carotovorum subsp. carotovorum PCCS1]
ATGTCATTGGCAGTTACCTATACTCGAGCAATGATTGGCGTACAAGCGCCGGACGTTTATATCGAAGTTCACATCAGCAG
TGGGCTACCGGCCCTAACGCTAGTTGGCTTACCAGAAACTACCGTTAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCCAAGCGCATCACGGTCAACCTTGCTCCCGCAGACCTGCCAAAAGAAGGGGGACGC
TACGACCTGCCGATTGCTCTGGCGATTCTGGCGGCATCAGAACAAATCGATGGGGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAATTAGGCCTGTCTGGCACGCTACGTGGCGTCAATGGCGCAATTCCCGCCGCACTGGAAGCCATAAAGTCAGGCC
GCCAGCTAATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAAGGTGAAGCGTTAATGGCTGGGCATTTG
TTGGAAGTGTGTGCTTTTCTCAGCGGGGAAGAGGAGCTACTCAGTTGCTCCGATATCGCACTGGCTCCGCAGTCAGAAGA
AGATGCACTCGACCTGAAGGATATCATCGGTCAGGAGCAGGCTAAACGCGCGTTGGAAATCGCGGCGGCTGGCGGTCACA
ATCTGCTATTGCTGGGGCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCCGATTAGGCAATCTGATGCCGCCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTCATCAACATTGATGCCACCATGACGCGCTGGCGTGCCAGACC
GTTCAGAGCGCCTCACCACAGTTCTTCTATGGCAGCACTCGTGGGGGGAGGATCGTTGCCAAAACCCGGAGAAATCTCAC
TTGCTCACAACGGCGTGCTGTTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTTCTGGATTCTCTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACGCGCGCCAAAGTGTGCTACCCGGCACGCGTACAGCTTGTTGCTGCAATGAA
TCCCAGCCCATCAGGCCACTATCAGGGCATCCATAACCGCTTACCCGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCGATCGAAGTTCCTTTGCTACCACCAGGGGTTTTATCTCAGCAACGTCAT
CAGGGAGAGAGCAGCGCAACAATTCGCGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTGCTCACCTCACGAGAAATAGAACAACACTGTGCGTTAGAAGCGCCTGATGCGGCTTATCTGGAAGAAGTGATGA
ACAAACTCGGCTTATCCGTACGCGCCTGGCACAGGATATTGAAAGTCGCACGCACAATCGCTGACCTCGGCGATCGAAAG
AGCATAGAGAGAAAACATCTTGCCGAAGCACTGAGCTATCGCAGTATGGATCGATTGCTCATCCAGCTCCACAGAAGTCT
TGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.032

99.606

0.638
  comM Vibrio cholerae strain A1552

64.016

99.016

0.634
  comM Glaesserella parasuis strain SC1401

63.314

99.803

0.632
  comM Vibrio campbellii strain DS40M4

62.846

99.606

0.626
  comM Legionella pneumophila str. Paris

50.699

98.622

0.5
  comM Legionella pneumophila strain ERS1305867

50.699

98.622

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.14

99.803

0.47