Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   INQ40_RS12230 Genome accession   NZ_CP063772
Coordinates   2686609..2688123 (+) Length   504 a.a.
NCBI ID   WP_194340640.1    Uniprot ID   -
Organism   Lysobacter sp. H21R4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2681609..2693123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ40_RS12210 (INQ40_12210) speE 2683018..2683869 (+) 852 WP_194340639.1 polyamine aminopropyltransferase -
  INQ40_RS12215 (INQ40_12215) - 2683876..2685801 (-) 1926 WP_228482027.1 DUF4153 domain-containing protein -
  INQ40_RS12220 (INQ40_12220) - 2685785..2686123 (-) 339 WP_043958974.1 P-II family nitrogen regulator -
  INQ40_RS12225 (INQ40_12225) - 2686300..2686599 (+) 300 WP_193984931.1 accessory factor UbiK family protein -
  INQ40_RS12230 (INQ40_12230) comM 2686609..2688123 (+) 1515 WP_194340640.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  INQ40_RS12235 (INQ40_12235) - 2688178..2688390 (-) 213 WP_194340641.1 DUF2945 domain-containing protein -
  INQ40_RS12240 (INQ40_12240) aceA 2688518..2689813 (-) 1296 WP_194340642.1 isocitrate lyase -
  INQ40_RS12245 (INQ40_12245) aceB 2689867..2691549 (-) 1683 WP_194340643.1 malate synthase A -
  INQ40_RS12250 (INQ40_12250) - 2691696..2692667 (+) 972 WP_194340644.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53127.99 Da        Isoelectric Point: 8.5239

>NTDB_id=496708 INQ40_RS12230 WP_194340640.1 2686609..2688123(+) (comM) [Lysobacter sp. H21R4]
MNLALVHSRARSGIRSAPVRVEVHLGGGLPSMSIVGLPETAVRESRERVRAAIQCAQFEFPARRITVNLAPADLPKGGGR
FDLPIALGILAASGQIPLEALGEYEFLGELGLTGELRAVDAVLPAALAAAQAGRKLVVPPANGAEAALVSGVETRTARTL
LEVCAMLSGHKSLPRADAAAPSRRVGPDLADVRGQAHARRALEVAAAGGHHLLLVGPPGCGKTLLASRLPGLLPVASDAE
ALDSAAVASLGGRGVDASLWRERPFRSPHHTASAVALVGGGAEPRPGEISMAHNGVLFLDELPEWSRRTLEVLREPLESG
TVTIARAARSVEFPARFQLVAAMNPCPCGWAGDPSGRCRCSPDMVLNYRARISGPLMDRIDLHVEVPRLPPSELRPDAAP
AENSDTVRERVVAARELQLARAGKANAHLSQSETGATCRLAEGDFALLERAIDTLHLSARSMHRILRVARTIADLAGSPQ
IQTTHLSEAIGYRRVDRGMPLATA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=496708 INQ40_RS12230 WP_194340640.1 2686609..2688123(+) (comM) [Lysobacter sp. H21R4]
ATGAACCTGGCACTCGTGCACAGCCGTGCGCGATCGGGCATCCGTTCCGCTCCGGTCCGCGTGGAGGTGCATCTGGGCGG
CGGGCTTCCCTCGATGTCGATCGTCGGCTTGCCGGAAACCGCGGTGCGCGAATCGCGTGAGCGCGTACGTGCCGCGATCC
AGTGCGCCCAGTTCGAATTCCCGGCCCGGCGGATCACCGTCAACCTCGCCCCCGCCGACCTGCCCAAGGGCGGCGGCCGC
TTCGACCTGCCGATCGCGCTGGGGATCCTCGCCGCCAGTGGGCAGATCCCGCTGGAGGCTCTGGGTGAATACGAGTTCCT
CGGCGAGCTGGGCCTGACCGGCGAGTTGCGCGCGGTGGACGCGGTGCTGCCGGCCGCGCTGGCCGCGGCCCAGGCCGGCC
GCAAACTGGTCGTGCCGCCCGCCAACGGCGCCGAAGCCGCACTGGTCAGCGGGGTGGAGACGCGGACCGCGCGCACGCTG
CTGGAAGTGTGCGCGATGTTGTCAGGGCATAAATCGCTGCCACGCGCCGACGCTGCAGCCCCGAGTCGGCGCGTCGGACC
GGACCTGGCCGATGTGCGCGGCCAGGCGCATGCGCGCCGCGCACTGGAGGTCGCCGCGGCGGGTGGTCACCACCTTCTCC
TCGTCGGGCCGCCAGGCTGCGGCAAGACGCTGCTCGCGTCCCGCTTGCCCGGTCTGCTGCCGGTGGCCAGCGACGCCGAA
GCGCTGGATTCGGCGGCCGTCGCTTCGCTGGGCGGACGTGGCGTGGACGCGTCGCTGTGGCGAGAACGCCCGTTCCGCTC
CCCGCACCACACGGCCAGTGCGGTCGCGCTGGTCGGCGGTGGCGCCGAGCCGCGACCGGGCGAAATTTCCATGGCGCACA
ACGGCGTACTGTTCCTGGACGAGCTGCCCGAGTGGAGCCGGCGCACGCTGGAGGTGCTGCGCGAGCCACTGGAGTCGGGC
ACTGTCACCATCGCGCGCGCCGCCCGCAGCGTCGAGTTCCCGGCGCGCTTCCAGCTGGTCGCAGCCATGAACCCCTGTCC
GTGCGGGTGGGCCGGCGACCCCAGCGGGCGCTGCCGCTGCAGCCCGGACATGGTCCTGAACTACCGCGCGCGAATCTCCG
GGCCGCTGATGGACCGGATCGACCTGCACGTCGAGGTGCCGCGGCTGCCGCCATCGGAACTGCGACCGGATGCCGCGCCT
GCCGAGAACAGCGATACCGTCCGCGAGCGCGTGGTCGCCGCCCGCGAGCTGCAGCTGGCTCGTGCGGGCAAGGCCAACGC
CCACCTCAGCCAGTCAGAGACCGGTGCGACTTGTCGCTTGGCCGAGGGAGACTTTGCCCTGCTGGAACGTGCGATCGACA
CCCTCCACCTGTCGGCGCGCTCGATGCACCGGATCCTGCGGGTGGCGCGGACAATCGCCGACCTGGCCGGCAGTCCACAG
ATCCAGACCACGCACCTGAGCGAGGCGATCGGCTATCGGCGAGTGGATCGCGGGATGCCTCTGGCAACCGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.724

100

0.552
  comM Vibrio cholerae strain A1552

55.11

99.008

0.546
  comM Glaesserella parasuis strain SC1401

53.175

100

0.532
  comM Haemophilus influenzae Rd KW20

52.778

100

0.528
  comM Legionella pneumophila str. Paris

50.701

99.008

0.502
  comM Legionella pneumophila strain ERS1305867

50.701

99.008

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.204

100

0.446