Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IOD65_RS18575 Genome accession   NZ_CP063769
Coordinates   3892516..3894003 (+) Length   495 a.a.
NCBI ID   WP_005065693.1    Uniprot ID   -
Organism   Acinetobacter sp. Ac-14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3887516..3899003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD65_RS18550 (IOD65_18550) ribD 3888471..3889556 (-) 1086 WP_005065700.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  IOD65_RS18555 (IOD65_18555) nrdR 3889572..3890030 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  IOD65_RS18560 (IOD65_18560) - 3890154..3891548 (-) 1395 WP_005065698.1 ammonium transporter -
  IOD65_RS18565 (IOD65_18565) glnK 3891606..3891944 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  IOD65_RS18570 (IOD65_18570) - 3892223..3892450 (+) 228 WP_005065695.1 accessory factor UbiK family protein -
  IOD65_RS18575 (IOD65_18575) comM 3892516..3894003 (+) 1488 WP_005065693.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IOD65_RS18580 (IOD65_18580) - 3894107..3894652 (+) 546 WP_005065691.1 NADPH-dependent FMN reductase -
  IOD65_RS18585 (IOD65_18585) - 3894677..3896110 (-) 1434 WP_005065689.1 PLP-dependent aminotransferase family protein -
  IOD65_RS18590 (IOD65_18590) - 3896222..3896998 (+) 777 WP_005065687.1 aldolase -
  IOD65_RS18595 (IOD65_18595) - 3897014..3897892 (+) 879 WP_005065685.1 dihydrodipicolinate synthase family protein -
  IOD65_RS18600 (IOD65_18600) - 3897934..3898746 (-) 813 WP_002121202.1 TorF family putative porin -
  IOD65_RS18605 (IOD65_18605) - 3898785..3898973 (-) 189 WP_002121272.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54495.66 Da        Isoelectric Point: 7.7209

>NTDB_id=496686 IOD65_RS18575 WP_005065693.1 3892516..3894003(+) (comM) [Acinetobacter sp. Ac-14]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL
KEVCDHFLGIKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPMPAE
DSTAVRQRVIYAYKQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=496686 IOD65_RS18575 WP_005065693.1 3892516..3894003(+) (comM) [Acinetobacter sp. Ac-14]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTTTGATTGAGGTCGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGAGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACAAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGATCACGT
CTAGATTTACCTATTGCTATAGGTATTTTAATTGCATCTGGCCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAGATGGTCATGTAAGGCCAGTGTCAGGCACTTTAACTTTGGCAATGGCGTGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAACAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA
AAAGAAGTTTGTGATCATTTCTTGGGCATAAAATCACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC
TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCGCTTTCTAAT
CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCACATACCTTTGGACAGCGTCCATTTCGGGCGCC
CCACCATACAGCATCAGCCATTGCACTAGTTGGGGGCGGCTCGCATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GCGTTTTGTTTTTAGATGAACTCCCTGAGTTTGACAGAAAAGTTCTAGAAGTCTTACGTCAGCCACTTGAATCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACCTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATTAAGCGCTATCAAAACCGTATATCAGGAC
CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAAGAACTGCAAGATCCAATGCCTGCTGAA
GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATAAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT
TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAACAACGTTTGA
ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGGCGCAAAGTGAGATGATCCAA
AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.605

100

0.507
  comM Glaesserella parasuis strain SC1401

49.9

100

0.503
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Haemophilus influenzae Rd KW20

48.697

100

0.491
  comM Vibrio campbellii strain DS40M4

47.677

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.467