Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IM698_RS00055 Genome accession   NZ_CP063682
Coordinates   17233..17790 (+) Length   185 a.a.
NCBI ID   WP_017061342.1    Uniprot ID   -
Organism   Vibrio splendidus strain ED144     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 12233..22790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM698_RS00040 (IM698_00040) uvrA 12296..15127 (-) 2832 WP_248395510.1 excinuclease ABC subunit UvrA -
  IM698_RS00045 (IM698_00045) galU 15277..16149 (-) 873 WP_019826989.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  IM698_RS00050 (IM698_00050) qstR 16307..16954 (-) 648 WP_248373823.1 LuxR C-terminal-related transcriptional regulator Regulator
  IM698_RS00055 (IM698_00055) ssb 17233..17790 (+) 558 WP_017061342.1 single-stranded DNA-binding protein Machinery gene
  IM698_RS00060 (IM698_00060) csrD 17952..19967 (+) 2016 WP_260809907.1 RNase E specificity factor CsrD -
  IM698_RS00065 (IM698_00065) - 19970..21412 (+) 1443 WP_248373827.1 MSHA biogenesis protein MshI -
  IM698_RS00070 (IM698_00070) pilO 21412..22059 (+) 648 WP_260809908.1 type 4a pilus biogenesis protein PilO -
  IM698_RS00075 (IM698_00075) - 22052..22384 (+) 333 WP_248373830.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20400.52 Da        Isoelectric Point: 5.2358

>NTDB_id=496201 IM698_RS00055 WP_017061342.1 17233..17790(+) (ssb) [Vibrio splendidus strain ED144]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGGWGQPQQPQQQQQQYSAPAQQQPKA
PQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=496201 IM698_RS00055 WP_017061342.1 17233..17790(+) (ssb) [Vibrio splendidus strain ED144]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCTAATGG
CGGCGCGGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTAGCTGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACAGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGCGGCCGTGCTCAAGGTGGTGCTCCTGCTCAAGGTGGCATGGGTAACAACCAACAGC
AAGGTGGTTGGGGTCAGCCACAGCAGCCACAACAACAGCAACAACAATACAGTGCTCCTGCTCAACAGCAGCCAAAAGCA
CCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.72

100

0.822
  ssb Glaesserella parasuis strain SC1401

57.447

100

0.584
  ssb Neisseria meningitidis MC58

47.568

100

0.476
  ssb Neisseria gonorrhoeae MS11

47.568

100

0.476