Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   IM698_RS00050 Genome accession   NZ_CP063682
Coordinates   16307..16954 (-) Length   215 a.a.
NCBI ID   WP_248373823.1    Uniprot ID   -
Organism   Vibrio splendidus strain ED144     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 11307..21954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM698_RS00040 (IM698_00040) uvrA 12296..15127 (-) 2832 WP_248395510.1 excinuclease ABC subunit UvrA -
  IM698_RS00045 (IM698_00045) galU 15277..16149 (-) 873 WP_019826989.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  IM698_RS00050 (IM698_00050) qstR 16307..16954 (-) 648 WP_248373823.1 LuxR C-terminal-related transcriptional regulator Regulator
  IM698_RS00055 (IM698_00055) ssb 17233..17790 (+) 558 WP_017061342.1 single-stranded DNA-binding protein Machinery gene
  IM698_RS00060 (IM698_00060) csrD 17952..19967 (+) 2016 WP_260809907.1 RNase E specificity factor CsrD -
  IM698_RS00065 (IM698_00065) - 19970..21412 (+) 1443 WP_248373827.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25172.22 Da        Isoelectric Point: 9.2500

>NTDB_id=496200 IM698_RS00050 WP_248373823.1 16307..16954(-) (qstR) [Vibrio splendidus strain ED144]
MRKSRYARTLHFLCIDPNDTYLHVKEIEKHLSIILYRMTPDELMLVDRKQSNRILLVDYKEVPQLLINCPNLTVMWKNNE
IIVFNVPQQLPTSELLTYGVLKGLFYNTEQKDKIARGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=496200 IM698_RS00050 WP_248373823.1 16307..16954(-) (qstR) [Vibrio splendidus strain ED144]
ATGAGAAAATCTCGATACGCTCGCACTTTGCATTTTCTGTGCATCGATCCAAACGACACCTATCTACATGTAAAAGAGAT
AGAAAAACACTTATCTATTATTCTCTACCGCATGACGCCCGACGAATTAATGTTAGTTGATAGAAAGCAGAGCAACCGAA
TCTTGCTCGTCGATTACAAAGAGGTTCCACAACTACTGATTAATTGCCCTAACCTGACTGTTATGTGGAAAAACAATGAG
ATCATCGTATTCAATGTCCCTCAGCAACTTCCAACCTCAGAGCTTCTTACCTATGGGGTTCTAAAAGGGCTCTTTTACAA
TACCGAGCAAAAAGACAAGATTGCTCGTGGTCTTCAAGAAGTCATTGATGGCGATAACTGGCTGCCAAGAAAGGTAACCA
ATCAACTGCTGTTTTATTACCGCAATATGGTTAATACCAACACGACTCCAACCAATGTTGATTTAACCATTCGTGAGATC
CAAGTGATTCGCTGCCTTCAATCAGGATCATCAAACACACAAATCGCCGATGATTTGTTTATTAGCGAGTTCACGGTTAA
ATCTCACCTTTATCAGATATTCCGTAAGTTGGCGGTCAAAAATAGGGTTCAAGCGATTGCATGGGCTAATCAGAACTTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

54.419

100

0.544
  qstR Vibrio parahaemolyticus RIMD 2210633

53.953

100

0.54
  qstR Vibrio cholerae strain A1552

48.131

99.535

0.479