Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   INQ41_RS12510 Genome accession   NZ_CP063656
Coordinates   2771599..2773113 (+) Length   504 a.a.
NCBI ID   WP_193984933.1    Uniprot ID   -
Organism   Novilysobacter ciconiae strain H21R20     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2766599..2778113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ41_RS12490 (INQ41_12480) speE 2768008..2768859 (+) 852 WP_193984929.1 polyamine aminopropyltransferase -
  INQ41_RS12495 (INQ41_12485) - 2768866..2770791 (-) 1926 WP_228076614.1 DUF4153 domain-containing protein -
  INQ41_RS12500 (INQ41_12490) - 2770775..2771113 (-) 339 WP_043958974.1 P-II family nitrogen regulator -
  INQ41_RS12505 (INQ41_12495) - 2771290..2771589 (+) 300 WP_193984931.1 ubiquinone biosynthesis accessory factor UbiK -
  INQ41_RS12510 (INQ41_12500) comM 2771599..2773113 (+) 1515 WP_193984933.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  INQ41_RS12515 (INQ41_12505) - 2773166..2773378 (-) 213 WP_193984935.1 DUF2945 domain-containing protein -
  INQ41_RS12520 (INQ41_12510) aceA 2773506..2774801 (-) 1296 WP_193984937.1 isocitrate lyase -
  INQ41_RS12525 (INQ41_12515) aceB 2774857..2776539 (-) 1683 WP_193984939.1 malate synthase A -
  INQ41_RS12530 (INQ41_12520) - 2776687..2777658 (+) 972 WP_193984941.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53228.03 Da        Isoelectric Point: 8.3371

>NTDB_id=496137 INQ41_RS12510 WP_193984933.1 2771599..2773113(+) (comM) [Novilysobacter ciconiae strain H21R20]
MNLALVHSRARSGIRAAPVRVEVHLGGGLPSMSIVGLPETAVRESRERVRAAIQCAQFEFPARRITVNLAPADLPKGGGR
FDLPIALGILAASGQIPPEALGEYEFLGELGLTGELRAVDAVLPAALAAAQAGRKLVVPPANGAEAALVSEGETRTARTL
LEVCAMLSGHKSLPRADAPAPSRRVGPDLADVRGQAHARRALEVAAAGGHHLLLVGPPGCGKTLLASRLPGLLPVASDAE
ALDSAAVASLGGRGVDASLWRERPFRSPHHTASAVALVGGGAEPRPGEISMAHNGVLFLDELPEWSRRTLEVLREPLESG
TVTIARAARSVEFPARFQLVAAMNPCPCGWAGDPSGRCRCSPDMVLNYRARISGPLMDRIDLHVEVPRLPPSELRPDAAP
SENSDTVRERVVAARELQLARSGKANAHLSQAETGSTCRLAETDFALLERAIDTLHLSARSMHRILRVARTIADLAGSPQ
IQTTHLSEAIGYRRVDRGMPLATA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=496137 INQ41_RS12510 WP_193984933.1 2771599..2773113(+) (comM) [Novilysobacter ciconiae strain H21R20]
ATGAACCTGGCACTCGTGCACAGCCGTGCGCGATCGGGCATCCGTGCCGCTCCGGTCCGCGTGGAGGTGCATCTGGGCGG
CGGGCTGCCGTCGATGTCGATCGTCGGCTTGCCGGAAACCGCGGTGCGCGAATCGCGTGAGCGCGTGCGCGCCGCGATCC
AGTGCGCCCAGTTCGAATTCCCGGCCCGGCGGATCACCGTCAACCTCGCCCCCGCCGACCTGCCCAAGGGCGGCGGTCGC
TTCGACCTGCCGATCGCTCTGGGGATCCTCGCCGCCAGTGGGCAGATCCCGCCGGAGGCCCTGGGTGAGTACGAGTTCCT
CGGCGAGCTGGGCCTGACCGGCGAGTTGCGCGCGGTGGACGCGGTGCTGCCGGCCGCGCTGGCCGCGGCCCAGGCCGGAC
GCAAACTGGTCGTACCGCCCGCCAACGGCGCCGAAGCCGCACTGGTCAGTGAGGGTGAGACACGGACCGCGCGCACGCTG
CTGGAAGTGTGCGCGATGCTGTCCGGGCACAAATCGCTGCCACGCGCCGACGCTCCAGCCCCGAGTCGGCGCGTCGGACC
GGACCTGGCCGACGTGCGCGGCCAGGCGCATGCGCGCCGCGCACTGGAGGTCGCCGCGGCGGGTGGCCACCATCTGCTCC
TCGTGGGGCCGCCAGGCTGCGGCAAGACCCTGCTCGCGTCCCGTTTGCCCGGTCTGCTGCCGGTGGCCAGCGACGCCGAA
GCGCTGGATTCGGCGGCCGTCGCTTCGCTGGGCGGACGTGGCGTGGACGCGTCGCTGTGGCGGGAACGCCCGTTCCGCTC
CCCGCACCACACGGCCAGTGCGGTCGCGCTGGTCGGCGGTGGCGCCGAGCCGCGACCGGGCGAAATTTCCATGGCGCACA
ACGGCGTACTGTTCCTGGACGAGCTGCCCGAGTGGAGCCGGCGCACGCTGGAGGTGCTGCGCGAGCCACTGGAGTCGGGC
ACCGTCACCATCGCGCGCGCCGCCCGCAGCGTCGAGTTCCCGGCGCGCTTCCAGCTGGTCGCAGCCATGAACCCCTGTCC
CTGCGGCTGGGCCGGCGACCCCAGCGGGCGCTGCCGCTGCAGCCCGGACATGGTCTTGAACTACCGCGCGCGCATCTCCG
GCCCGCTGATGGACCGGATCGACCTGCACGTCGAGGTACCCAGGCTGCCGCCATCGGAACTGCGACCGGATGCCGCGCCT
TCCGAGAACAGCGATACCGTCCGCGAGCGAGTGGTTGCCGCCCGCGAGCTGCAGCTGGCCCGTTCCGGCAAGGCCAACGC
CCACCTCAGTCAAGCAGAGACCGGGTCGACTTGCCGTCTGGCCGAGACCGATTTTGCCCTACTGGAACGCGCGATCGACA
CCCTCCACCTGTCGGCGCGCTCGATGCACCGGATCCTGCGGGTGGCGCGGACGATCGCCGACCTGGCCGGCAGTCCACAG
ATCCAGACCACGCACCTGAGCGAGGCGATCGGCTACCGGCGAGTGGATCGCGGGATGCCCTTGGCAACCGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.138

100

0.554
  comM Vibrio cholerae strain A1552

55.511

99.008

0.55
  comM Glaesserella parasuis strain SC1401

53.571

100

0.536
  comM Haemophilus influenzae Rd KW20

52.778

100

0.528
  comM Legionella pneumophila str. Paris

50.701

99.008

0.502
  comM Legionella pneumophila strain ERS1305867

50.701

99.008

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.204

100

0.446