Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   INS04_RS20710 Genome accession   NZ_CP063441
Coordinates   4397171..4398691 (+) Length   506 a.a.
NCBI ID   WP_193805314.1    Uniprot ID   -
Organism   Enterobacter asburiae strain SD4L     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4392171..4403691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INS04_RS20685 (INS04_20685) ilvE 4393737..4394666 (-) 930 WP_023309654.1 branched-chain-amino-acid transaminase -
  INS04_RS20690 (INS04_20690) ilvM 4394685..4394948 (-) 264 WP_023309655.1 acetolactate synthase 2 small subunit -
  INS04_RS20695 (INS04_20695) ilvG 4394945..4396591 (-) 1647 WP_193805313.1 acetolactate synthase 2 catalytic subunit -
  INS04_RS20700 (INS04_20700) ilvX 4396594..4396644 (-) 51 WP_166792073.1 peptide IlvX -
  INS04_RS20705 (INS04_20705) ilvL 4396731..4396829 (-) 99 WP_001311244.1 ilv operon leader peptide -
  INS04_RS20710 (INS04_20710) comM 4397171..4398691 (+) 1521 WP_193805314.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  INS04_RS20715 (INS04_20715) - 4398722..4399060 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  INS04_RS20720 (INS04_20720) hdfR 4399179..4400000 (+) 822 WP_193805315.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54983.97 Da        Isoelectric Point: 6.8176

>NTDB_id=495662 INS04_RS20710 WP_193805314.1 4397171..4398691(+) (comM) [Enterobacter asburiae strain SD4L]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDVIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRARAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPCLLRQTSITG
ESSAEVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=495662 INS04_RS20710 WP_193805314.1 4397171..4398691(+) (comM) [Enterobacter asburiae strain SD4L]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAAGCACCGCTTATTTCCGTCGAGGTTCATTTGAGCAA
TGGGCTACCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTGGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTTGT
TGGCGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGAGCAGGGC
GGCAAATCATTGTCGCCAATGAAAATGCATCAGAAGTGAGTCTTATTGCCGAGAAGGGGTGTCTCATCGCCGGGCATTTA
CAGGAAGTTTGTGCGTGGCTGGAAGGACGGCATGAACTGTCCGAGCCGGAGGAATGTGATGATGTTATAGCGGATGCACC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCGGCAGGTGGACACAATCTTC
TGTTAATTGGCCCGCCGGGTACGGGGAAAACGATGCTGGCGAGCAGGCTGAGTGGGTTGCTTCCACCGCTCAATAACCAT
GAAGCGCTGGAAAGCGCCGCCATATATAGTCTCATCAGTTCTGCATCGTTGCAAAAACAGTGGCGCCGTCGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGCGGCGGGTCTATCCCCGGGCCGGGTGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTTGACGAGCTGCCGGAGTTTGAGCGCCGCGTGCTGGATGCACTGAGGGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCGCACGAGCGAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTTGCGGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGAAACCATAACCGCTGTACGCCAGAGCAGACGTTGCGTTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTCCCCCCGCCGTGTCTGCTCAGGCAAACGAGCATAACGGGT
GAAAGCTCAGCGGAGGTACGCGAACGGGTGATTGCAGCCCAGACGCGGCAGTATGCTCGTCAGAACAGGTTGAATGCGCG
GCTGGATAACGCCGGGATCCGGCAGTTTTGTTCTCTTAACGTCGAAGATGCGGGATGGCTGGAGGAGACGTTGACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAGCGTTTGCTGAAGGTGGCCAGAACTATTGCTGACGTAGAGGGGTGCACTGACATT
GAGAGAAAGCATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

57.957

100

0.583
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio campbellii strain DS40M4

58.449

99.407

0.581
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443