Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   INS04_RS01520 Genome accession   NZ_CP063441
Coordinates   329026..329556 (+) Length   176 a.a.
NCBI ID   WP_047653100.1    Uniprot ID   -
Organism   Enterobacter asburiae strain SD4L     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 324026..334556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INS04_RS01500 (INS04_01500) aphA 324350..325063 (+) 714 WP_032662578.1 acid phosphatase AphA -
  INS04_RS01505 (INS04_01505) - 325177..325593 (+) 417 WP_023310052.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  INS04_RS01510 (INS04_01510) - 325596..325949 (+) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  INS04_RS01515 (INS04_01515) uvrA 325953..328775 (-) 2823 WP_047653101.1 excinuclease ABC subunit UvrA -
  INS04_RS01520 (INS04_01520) ssb 329026..329556 (+) 531 WP_047653100.1 single-stranded DNA-binding protein SSB1 Machinery gene
  INS04_RS01525 (INS04_01525) - 329619..329900 (-) 282 WP_047653099.1 YjcB family protein -
  INS04_RS01530 (INS04_01530) - 330547..332112 (+) 1566 WP_047653098.1 EAL domain-containing protein -
  INS04_RS01535 (INS04_01535) soxS 332119..332445 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  INS04_RS01540 (INS04_01540) soxR 332544..333002 (+) 459 WP_023310057.1 redox-sensitive transcriptional activator SoxR -
  INS04_RS01545 (INS04_01545) - 333270..333941 (+) 672 WP_193805526.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18839.83 Da        Isoelectric Point: 5.2456

>NTDB_id=495644 INS04_RS01520 WP_047653100.1 329026..329556(+) (ssb) [Enterobacter asburiae strain SD4L]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
AQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=495644 INS04_RS01520 WP_047653100.1 329026..329556(+) (ssb) [Enterobacter asburiae strain SD4L]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGTGTAGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCTGAGAAGTACACCACGGAAGTCGTGGTCAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAGCCAACAGCAGGGCGGTT
GGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCGCAGTCAAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.784
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.067

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364