Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IP581_RS01555 Genome accession   NZ_CP063425
Coordinates   331663..332187 (+) Length   174 a.a.
NCBI ID   WP_061498794.1    Uniprot ID   -
Organism   Kosakonia pseudosacchari strain BDA62-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 326663..337187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP581_RS01540 (IP581_01540) - 327232..327987 (-) 756 WP_228007801.1 response regulator -
  IP581_RS01545 (IP581_01545) - 328222..328575 (+) 354 WP_086873925.1 MmcQ/YjbR family DNA-binding protein -
  IP581_RS01550 (IP581_01550) uvrA 328576..331401 (-) 2826 WP_086873926.1 excinuclease ABC subunit UvrA -
  IP581_RS01555 (IP581_01555) ssb 331663..332187 (+) 525 WP_061498794.1 single-stranded DNA-binding protein SSB1 Machinery gene
  IP581_RS01560 (IP581_01560) - 332519..333292 (-) 774 WP_086873927.1 amino acid ABC transporter substrate-binding protein -
  IP581_RS01565 (IP581_01565) - 333315..334085 (-) 771 WP_193821592.1 amino acid ABC transporter ATP-binding protein -
  IP581_RS01570 (IP581_01570) - 334063..334758 (-) 696 WP_193821593.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18707.71 Da        Isoelectric Point: 5.2456

>NTDB_id=495582 IP581_RS01555 WP_061498794.1 331663..332187(+) (ssb) [Kosakonia pseudosacchari strain BDA62-3]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=495582 IP581_RS01555 WP_061498794.1 331663..332187(+) (ssb) [Kosakonia pseudosacchari strain BDA62-3]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACCG
AATGGCACCGCGTGGTGCTGTTTGGCAAGCTGGCGGAAGTCGCTGGTGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATATACCACTGAAGTCGTTGTTAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGTGGCGGCGCACCGGCGGGTGGCGGTCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCCGCACCGGCACCG
TCTAACGAACCGCCGATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.379