Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   INP70_RS11840 Genome accession   NZ_CP063420
Coordinates   2618293..2618826 (-) Length   177 a.a.
NCBI ID   WP_000168287.1    Uniprot ID   A0A2A1YRC3
Organism   Vibrio cholerae strain VC_hf7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2613293..2623826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP70_RS11820 - 2613748..2614065 (-) 318 WP_000252812.1 MSHA biogenesis protein MshK -
  INP70_RS11825 gspM 2614058..2614708 (-) 651 WP_000835144.1 type II secretion system protein GspM -
  INP70_RS11830 - 2614705..2616144 (-) 1440 WP_000743257.1 PilN domain-containing protein -
  INP70_RS11835 csrD 2616157..2618169 (-) 2013 WP_002022932.1 RNase E specificity factor CsrD -
  INP70_RS11840 ssb 2618293..2618826 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  INP70_RS11845 qstR 2619118..2619762 (+) 645 WP_001188315.1 LuxR C-terminal-related transcriptional regulator Regulator
  INP70_RS11850 galU 2619935..2620807 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  INP70_RS11855 uvrA 2620963..2623785 (+) 2823 WP_000357696.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19644.85 Da        Isoelectric Point: 5.7626

>NTDB_id=495540 INP70_RS11840 WP_000168287.1 2618293..2618826(-) (ssb) [Vibrio cholerae strain VC_hf7]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=495540 INP70_RS11840 WP_000168287.1 2618293..2618826(-) (ssb) [Vibrio cholerae strain VC_hf7]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCTACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGCAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGCATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A1YRC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

99.435

100

0.994
  ssb Glaesserella parasuis strain SC1401

52.198

100

0.537
  ssb Neisseria meningitidis MC58

47.778

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.486