Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   INP70_RS11845 Genome accession   NZ_CP063420
Coordinates   2619118..2619762 (+) Length   214 a.a.
NCBI ID   WP_001188315.1    Uniprot ID   -
Organism   Vibrio cholerae strain VC_hf7     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2614118..2624762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP70_RS11830 - 2614705..2616144 (-) 1440 WP_000743257.1 PilN domain-containing protein -
  INP70_RS11835 csrD 2616157..2618169 (-) 2013 WP_002022932.1 RNase E specificity factor CsrD -
  INP70_RS11840 ssb 2618293..2618826 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  INP70_RS11845 qstR 2619118..2619762 (+) 645 WP_001188315.1 LuxR C-terminal-related transcriptional regulator Regulator
  INP70_RS11850 galU 2619935..2620807 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  INP70_RS11855 uvrA 2620963..2623785 (+) 2823 WP_000357696.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24708.52 Da        Isoelectric Point: 9.6461

>NTDB_id=495541 INP70_RS11845 WP_001188315.1 2619118..2619762(+) (qstR) [Vibrio cholerae strain VC_hf7]
MQRANYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQAQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=495541 INP70_RS11845 WP_001188315.1 2619118..2619762(+) (qstR) [Vibrio cholerae strain VC_hf7]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCAAAAGCGTTACATCCCAGTATTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACAGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGCTCAAGCAACGGTCGATTTGACTGCACGTGAAATA
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGTTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

99.533

100

0.995
  qstR Vibrio campbellii strain DS40M4

52.804

100

0.528
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.528