Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   INP70_RS04730 Genome accession   NZ_CP063420
Coordinates   1014217..1014528 (+) Length   103 a.a.
NCBI ID   WP_001166105.1    Uniprot ID   Q9KQT1
Organism   Vibrio cholerae strain VC_hf7     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1009217..1019528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP70_RS04715 lon 1009254..1011614 (+) 2361 WP_001047611.1 endopeptidase La -
  INP70_RS04720 - 1011798..1012070 (+) 273 WP_001044516.1 HU family DNA-binding protein -
  INP70_RS04725 ppiD 1012223..1014082 (+) 1860 WP_002053088.1 peptidylprolyl isomerase -
  INP70_RS04730 comEA 1014217..1014528 (+) 312 WP_001166105.1 ComEA family DNA-binding protein Machinery gene
  INP70_RS04735 cmk 1014711..1015388 (+) 678 WP_000094752.1 (d)CMP kinase -
  INP70_RS04740 rpsA 1015497..1017167 (+) 1671 WP_000140318.1 30S ribosomal protein S1 -
  INP70_RS04745 ihfB 1017456..1017734 (+) 279 WP_000167341.1 integration host factor subunit beta -
  INP70_RS04750 - 1017873..1018154 (+) 282 WP_000691492.1 LapA family protein -
  INP70_RS04755 lapB 1018166..1019335 (+) 1170 WP_000889971.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10966.78 Da        Isoelectric Point: 5.0506

>NTDB_id=495521 INP70_RS04730 WP_001166105.1 1014217..1014528(+) (comEA) [Vibrio cholerae strain VC_hf7]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=495521 INP70_RS04730 WP_001166105.1 1014217..1014528(+) (comEA) [Vibrio cholerae strain VC_hf7]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KQT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

100

100

1
  comEA Vibrio cholerae strain A1552

100

100

1
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437