Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   INP70_RS00100 Genome accession   NZ_CP063420
Coordinates   22642..24165 (+) Length   507 a.a.
NCBI ID   WP_000521786.1    Uniprot ID   -
Organism   Vibrio cholerae strain VC_hf7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 17642..29165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP70_RS00085 ilvE 19216..20154 (-) 939 WP_000201997.1 branched-chain-amino-acid transaminase -
  INP70_RS00090 ilvM 20166..20450 (-) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  INP70_RS00095 ilvG 20462..22108 (-) 1647 WP_000145264.1 acetolactate synthase 2 catalytic subunit -
  INP70_RS00100 comM 22642..24165 (+) 1524 WP_000521786.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  INP70_RS00105 - 24255..25139 (+) 885 WP_000881900.1 acyltransferase -
  INP70_RS00110 - 25216..25818 (-) 603 WP_000732283.1 thiol:disulfide interchange protein DsbA/DsbL -
  INP70_RS00115 - 25849..26835 (-) 987 WP_000189615.1 serine/threonine protein kinase -
  INP70_RS00120 ccoG 26883..28307 (-) 1425 WP_000076150.1 cytochrome c oxidase accessory protein CcoG -
  INP70_RS00125 - 28708..28974 (-) 267 WP_000649654.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55114.22 Da        Isoelectric Point: 8.3637

>NTDB_id=495505 INP70_RS00100 WP_000521786.1 22642..24165(+) (comM) [Vibrio cholerae strain VC_hf7]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARNKLESYEFIGELALSGEIRGVKGVLPAALAANQVERCLVVPHSNGDQAALVGVERHKSAQSL
LEVCADLCGQQTLSLFQSSPSVHQVSQTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAVVRQRVWVARERMLARSGKVNALLQSREIEQYCPLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=495505 INP70_RS00100 WP_000521786.1 22642..24165(+) (comM) [Vibrio cholerae strain VC_hf7]
ATGGGACTTGCGATCATTCATAGCCGCGCCAGTATTGGCGTGCAGGCACCTCCGGTCACGGTTGAGGTTCACATCAGTAA
CGGGATGCCGGGGTTTACCTTGGTAGGATTGCCAGAAACTACAGTAAAAGAGTCGCGCGATCGGGTGCGCAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCAGCGAAGCGCATTACGGTCAATTTAGCGCCAGCCGATTTACCCAAAGAGGGGGGACGT
TTTGATTTGCCGATTGCACTTGGCATTTTGGCGGCCTCGGATCAAATTGCGCGAAATAAGCTCGAAAGTTACGAATTTAT
CGGCGAATTGGCGCTATCGGGCGAAATTCGTGGCGTGAAAGGGGTTTTGCCTGCCGCGCTCGCGGCTAACCAAGTGGAGC
GCTGTTTAGTGGTGCCGCACAGTAATGGCGATCAGGCGGCTTTGGTCGGGGTTGAGCGGCATAAGTCGGCGCAAAGCTTA
CTCGAAGTGTGCGCGGACTTGTGTGGTCAGCAAACTCTATCTTTGTTTCAAAGTTCGCCCAGTGTGCATCAAGTAAGTCA
GACGCGCGATCTGCAAGACATCATAGGTCAGCAGCAGGGAAAACGAGCTTTGGAAATCGCTGCGGCTGGCAATCACAACC
TGCTGTTTCTCGGCCCTCCGGGGACGGGTAAAACCATGCTCGCTTCACGGCTGTGCGATTTACTGCCAGAAATGAGTGAT
GAAGAGGCGATGGAAACAGCCTCGATTGCCTCTCTTACGCAGCAAGAGATTAACCAACACAACTGGAAGTTACGCCCTTT
TCGTGCACCGCACCATTCAAGCTCAATGGCGGCTTTAGTCGGGGGCGGCACCATTCCACGCCCCGGTGAAATTTCTCTCG
CCCATAATGGACTACTGTTTTTGGACGAAATGCCGGAGTTTGAGCGTAAAGTGCTGGATTCACTGCGTGAACCGCTGGAA
TCGGGTGAGATCGTGATTTCGCGCGCGCAGGGGAAAACCCGTTTTCCAGCACGCTTTCAATTGGTCGGCGCGTTAAATCC
AAGCCCCACGGGCTACTACGAAGGCAGTCAGGCGCGTGCCAATCCGCAGAGTATTTTGCGCTATTTGAGTCGGCTTTCGG
GCCCTTTGTTGGATCGCTTTGATATGTCGATTGAGATCCCTGCGTTACCCAAAGGTACGCTCGCCAATGGGGGCGATCGT
GGTGAATCGACGGCGGTTGTGCGCCAGCGAGTGTGGGTAGCGCGTGAGCGTATGTTGGCGCGATCGGGCAAAGTGAATGC
TTTGCTGCAAAGTCGAGAAATTGAACAGTATTGCCCTTTGCTTAAAGCGGATGCGGAATTTCTAGAAAGCGCGCTGCATC
GCTTGGGTTTATCTATTCGGGCTTACCACCGGATCATTAAAGTGGCGCGAACCATAGCGGATTTGCAAGGTGAAGCGCAG
ATCGCTCGTCCACATTTGGCCGAGGCGTTGGGCTATCGAGCCATGGATCGCTTACTCAAACAGCTCAGTGCGCAGAACGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

99.606

100

0.996
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

67.258

100

0.673
  comM Glaesserella parasuis strain SC1401

63.953

100

0.651
  comM Legionella pneumophila str. Paris

50.605

97.83

0.495
  comM Legionella pneumophila strain ERS1305867

50.605

97.83

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.529

100

0.438