Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KIM08_RS26555 Genome accession   NZ_CP074914
Coordinates   5148750..5149874 (-) Length   374 a.a.
NCBI ID   WP_000228529.1    Uniprot ID   -
Organism   Escherichia coli strain 08_3323     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5143750..5154874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM08_RS26525 (KIM08_26185) yrdA 5145550..5146104 (+) 555 WP_001286216.1 gamma carbonic anhydrase family protein -
  KIM08_RS26530 (KIM08_26190) yrdB 5146080..5146337 (-) 258 WP_001070563.1 DUF1488 domain-containing protein -
  KIM08_RS26535 (KIM08_26195) aroE 5146334..5147152 (-) 819 WP_000451211.1 shikimate dehydrogenase -
  KIM08_RS26540 (KIM08_26200) tsaC 5147157..5147729 (-) 573 WP_001297709.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  KIM08_RS26545 (KIM08_26205) yrdD 5147734..5148276 (-) 543 WP_001129719.1 type I DNA topoisomerase -
  KIM08_RS26550 (KIM08_26210) smg 5148305..5148778 (-) 474 WP_000460672.1 DUF494 family protein Smg -
  KIM08_RS26555 (KIM08_26215) dprA 5148750..5149874 (-) 1125 WP_000228529.1 DNA-protecting protein DprA Machinery gene
  KIM08_RS26560 (KIM08_26220) def 5150004..5150513 (+) 510 WP_000114986.1 peptide deformylase -
  KIM08_RS26565 (KIM08_26225) fmt 5150528..5151475 (+) 948 WP_000004477.1 methionyl-tRNA formyltransferase -
  KIM08_RS26570 (KIM08_26230) rsmB 5151521..5152810 (+) 1290 WP_000744775.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  KIM08_RS26575 (KIM08_26235) trkA 5152832..5154208 (+) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  KIM08_RS26580 (KIM08_26240) mscL 5154338..5154748 (+) 411 WP_000022439.1 large-conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40926.86 Da        Isoelectric Point: 6.3122

>NTDB_id=495316 KIM08_RS26555 WP_000228529.1 5148750..5149874(-) (dprA) [Escherichia coli strain 08_3323]
MVDTEIWLRLMSISSLYGDDMVRIAHWLAKQSQIDAVGLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLAASLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=495316 KIM08_RS26555 WP_000228529.1 5148750..5149874(-) (dprA) [Escherichia coli strain 08_3323]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGTATCAGCAGCTTGTACGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCAAATTGATGCGGTTGGATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGGTTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGCCATGCCCGACTGGCTGCCAGTCTGCT
TGAACATGGCGGAGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGCAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.509

98.663

0.479
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

44.865

98.93

0.444
  dprA Vibrio cholerae strain A1552

44.865

98.93

0.444
  dprA Haemophilus influenzae Rd KW20

45.401

90.107

0.409
  dprA Glaesserella parasuis strain SC1401

44.838

90.642

0.406
  dprA Legionella pneumophila strain ERS1305867

44.545

88.235

0.393