Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EVG01_RS13725 Genome accession   NZ_CP063383
Coordinates   2722707..2723189 (-) Length   160 a.a.
NCBI ID   WP_061671720.1    Uniprot ID   -
Organism   Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 18-04540     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2717707..2728189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EVG01_RS13685 (EVG01_13680) - 2718323..2719642 (-) 1320 WP_003734912.1 PBSX family phage terminase large subunit -
  EVG01_RS13690 (EVG01_13685) terS 2719635..2720375 (-) 741 WP_061671719.1 phage terminase small subunit -
  EVG01_RS13695 (EVG01_13690) - 2720415..2720642 (-) 228 WP_003725074.1 hypothetical protein -
  EVG01_RS13700 (EVG01_13695) - 2720903..2721475 (-) 573 WP_003734998.1 sigma-70 family RNA polymerase sigma factor -
  EVG01_RS13705 (EVG01_13700) - 2721565..2721720 (-) 156 WP_003734997.1 hypothetical protein -
  EVG01_RS13710 (EVG01_13705) - 2721761..2722144 (-) 384 WP_003734996.1 DUF2481 family protein -
  EVG01_RS13715 (EVG01_13710) - 2722148..2722552 (-) 405 WP_003734995.1 DUF1064 domain-containing protein -
  EVG01_RS13720 (EVG01_13715) - 2722497..2722688 (-) 192 WP_003734994.1 hypothetical protein -
  EVG01_RS13725 (EVG01_13720) ssbA 2722707..2723189 (-) 483 WP_061671720.1 single-stranded DNA-binding protein Machinery gene
  EVG01_RS13730 (EVG01_13725) - 2723189..2723590 (-) 402 WP_003743377.1 hypothetical protein -
  EVG01_RS13735 (EVG01_13730) - 2723601..2723828 (-) 228 WP_003743375.1 ASCH/PUA domain-containing protein -
  EVG01_RS13740 (EVG01_13735) - 2723829..2724014 (-) 186 WP_003743374.1 hypothetical protein -
  EVG01_RS13745 (EVG01_13740) - 2724014..2724304 (-) 291 WP_061691215.1 hypothetical protein -
  EVG01_RS13750 (EVG01_13745) - 2724301..2724486 (-) 186 WP_003727764.1 hypothetical protein -
  EVG01_RS13755 (EVG01_13750) - 2724483..2724875 (-) 393 WP_061092564.1 YopX family protein -
  EVG01_RS13760 (EVG01_13755) - 2725002..2725523 (-) 522 WP_031644380.1 YopX family protein -
  EVG01_RS13765 (EVG01_13760) - 2725520..2726152 (-) 633 WP_003734948.1 DUF1642 domain-containing protein -
  EVG01_RS13770 (EVG01_13765) - 2726149..2726961 (-) 813 WP_003734949.1 DNA adenine methylase -
  EVG01_RS13775 (EVG01_13770) - 2726958..2727938 (-) 981 WP_003734950.1 phage replisome organizer N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17730.52 Da        Isoelectric Point: 4.9725

>NTDB_id=495002 EVG01_RS13725 WP_061671720.1 2722707..2723189(-) (ssbA) [Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 18-04540]
MMNRVVLVGRLTKDPELRYTPAGLAVATFTLAVNRAFTNQNGEREADFIQCVVWRKPAENVANFLKKGSLAGVDGRIQTR
NYEDNDGKRVFVTEVVAESVQFLEPKNNNAEGATSNNYQSGSNYSNNNQTSSYRADTSQKSDSFANEGKPIDINPDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=495002 EVG01_RS13725 WP_061671720.1 2722707..2723189(-) (ssbA) [Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 18-04540]
ATGATGAATCGTGTAGTACTTGTAGGACGATTAACGAAAGACCCTGAATTACGTTACACTCCAGCTGGATTAGCTGTTGC
GACTTTTACATTAGCTGTAAACCGCGCTTTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATTCAATGTGTTGTTT
GGCGTAAACCAGCGGAAAATGTTGCTAATTTCTTGAAAAAAGGAAGCTTGGCAGGCGTCGATGGACGCATACAGACTCGA
AATTATGAGGATAACGACGGTAAACGCGTTTTTGTTACGGAAGTAGTTGCTGAATCAGTTCAATTCTTAGAGCCTAAAAA
TAACAACGCAGAAGGCGCTACATCGAATAATTACCAAAGTGGGTCTAATTATTCAAATAACAACCAAACAAGCTCATATC
GAGCTGATACGAGCCAGAAGAGCGATTCATTTGCAAACGAGGGTAAACCGATAGATATTAATCCGGATGATTTACCATTT
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.86

100

0.719
  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

66.25

0.419
  ssb Neisseria meningitidis MC58

34.104

100

0.369
  ssb Neisseria gonorrhoeae MS11

33.526

100

0.362