Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CA266_RS04055 Genome accession   NZ_CP063354
Coordinates   856848..857381 (-) Length   177 a.a.
NCBI ID   WP_033654707.1    Uniprot ID   -
Organism   Serratia marcescens strain SCQ1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 851848..862381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA266_RS04020 (CA266_04020) - 852278..852721 (-) 444 WP_193843114.1 lipocalin-like domain-containing protein -
  CA266_RS04025 (CA266_04025) bhsA 852917..853177 (+) 261 WP_004936809.1 multiple stress resistance protein BhsA -
  CA266_RS04030 (CA266_04030) - 853233..854150 (-) 918 WP_193843115.1 LysR family transcriptional regulator -
  CA266_RS04035 (CA266_04035) - 854278..855027 (+) 750 WP_193843116.1 3-oxoacyl-ACP reductase family protein -
  CA266_RS04040 (CA266_04040) - 855078..855554 (-) 477 WP_049299924.1 Rrf2 family transcriptional regulator -
  CA266_RS04045 (CA266_04045) - 855712..856092 (+) 381 WP_049299925.1 hypothetical protein -
  CA266_RS04050 (CA266_04050) - 856104..856799 (+) 696 WP_049299926.1 class I SAM-dependent methyltransferase -
  CA266_RS04055 (CA266_04055) ssb 856848..857381 (-) 534 WP_033654707.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CA266_RS04060 (CA266_04060) uvrA 857659..860487 (+) 2829 WP_015379213.1 excinuclease ABC subunit UvrA -
  CA266_RS04065 (CA266_04065) - 860717..861769 (+) 1053 WP_016930261.1 NAD(P)-dependent alcohol dehydrogenase -
  CA266_RS04070 (CA266_04070) maa 861801..862358 (-) 558 WP_049299927.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18865.76 Da        Isoelectric Point: 5.2358

>NTDB_id=494543 CA266_RS04055 WP_033654707.1 856848..857381(-) (ssb) [Serratia marcescens strain SCQ1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=494543 CA266_RS04055 WP_033654707.1 856848..857381(-) (ssb) [Serratia marcescens strain SCQ1]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGGGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACGCGCAAATGGCAGGATCAGAGCGGTCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGGCCAGCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.824

100

0.78
  ssb Glaesserella parasuis strain SC1401

59.358

100

0.627
  ssb Neisseria meningitidis MC58

47.594

100

0.503
  ssb Neisseria gonorrhoeae MS11

47.594

100

0.503
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.362