Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IHJ55_RS00995 Genome accession   NZ_CP063242
Coordinates   235430..236956 (-) Length   508 a.a.
NCBI ID   WP_203470646.1    Uniprot ID   -
Organism   Pectobacterium carotovorum strain XP-13     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 230430..241956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHJ55_RS00970 (IHJ55_00970) ytfR 230586..232106 (+) 1521 WP_203470645.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  IHJ55_RS00975 (IHJ55_00975) ytfT 232093..233103 (+) 1011 WP_039474307.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  IHJ55_RS00980 (IHJ55_00980) yjfF 233103..234065 (+) 963 WP_010294682.1 galactofuranose ABC transporter, permease protein YjfF -
  IHJ55_RS00985 (IHJ55_00985) hdfR 234087..234914 (-) 828 WP_010294681.1 HTH-type transcriptional regulator HdfR -
  IHJ55_RS00990 (IHJ55_00990) - 235035..235373 (+) 339 WP_010283921.1 DUF413 domain-containing protein -
  IHJ55_RS00995 (IHJ55_00995) comM 235430..236956 (-) 1527 WP_203470646.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IHJ55_RS01000 (IHJ55_01000) ilvL 237364..237462 (+) 99 WP_071531109.1 ilv operon leader peptide -
  IHJ55_RS01005 (IHJ55_01005) ilvG 237603..239249 (+) 1647 WP_203470647.1 acetolactate synthase 2 catalytic subunit -
  IHJ55_RS01010 (IHJ55_01010) ilvM 239328..239588 (+) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  IHJ55_RS01015 (IHJ55_01015) - 239614..240540 (+) 927 WP_039508688.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55502.17 Da        Isoelectric Point: 6.6907

>NTDB_id=494112 IHJ55_RS00995 WP_203470646.1 235430..236956(-) (comM) [Pectobacterium carotovorum strain XP-13]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKAGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPPIEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPSLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGDRN
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=494112 IHJ55_RS00995 WP_203470646.1 235430..236956(-) (comM) [Pectobacterium carotovorum strain XP-13]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCACATCAGCAG
CGGGCTGCCGGCCCTAACGCTGGTGGGCTTACCTGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCAAAGCGCATCACGGTCAATCTCGCTCCCGCAGACTTGCCAAAAGAAGGGGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGTCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCCGCATTAGAAGCCATAAAAGCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCACAGGGTGAAGCGCTAATGGCTGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGTGGGGAAGAGGAATTGCTCAGTTGCTCCGACATGACGCCCGTTCCACCGATCGAGGA
GGATACCCTCGATCTGAAGGATATCATCGGTCAGGAGCAGGCGAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGCCATA
ACTTGCTCTTACTGGGGCCACCGGGAACCGGGAAAACCATGCTGGCAAGCCGATTAGGCAATCTGATGCCGTCATTAAGC
GATGAAGAAGCACTAGAAAGCGCCGCTATCAACAGTCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGGCC
ATTCAGAGCACCTCACCATAGTTCCTCCATGGCTGCGCTCGTGGGCGGAGGGTCGCTGCCCAAACCCGGAGAGATCTCGC
TCGCCCACAACGGCGTGCTATTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTTTTAGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCTAAAGTGTGCTACCCAGCACGGGTGCAGCTCGTCGCCGCAATGAA
CCCCAGCCCTTCAGGCCACTATCAGGGCGTTCATAACCGATTGCCAGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTGCTGCCTCCGGGGGTGTTATCTCAGCAGCATTAT
CAAGGCGAAAGCAGCGCGACGATTCGCGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCACTACTCACTTCACGTGAAATAGAAAAACATTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTAATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATATTGAAAGTCGCGCGCACGATAGCTGACCTCGGCGATCGGAAC
AACATAGAGAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGATTGCTCATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.834

99.606

0.636
  comM Vibrio cholerae strain A1552

64.016

99.016

0.634
  comM Glaesserella parasuis strain SC1401

63.261

100

0.634
  comM Vibrio campbellii strain DS40M4

62.648

99.606

0.624
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.019

100

0.467