Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IHJ54_RS19455 Genome accession   NZ_CP063241
Coordinates   4396065..4397591 (+) Length   508 a.a.
NCBI ID   WP_014916972.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain ZLMLSHJ5     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4391065..4402591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHJ54_RS19435 (IHJ54_19420) - 4392502..4393428 (-) 927 WP_014916970.1 branched-chain amino acid transaminase -
  IHJ54_RS19440 (IHJ54_19425) ilvM 4393454..4393714 (-) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  IHJ54_RS19445 (IHJ54_19430) ilvG 4393772..4395418 (-) 1647 WP_039286279.1 acetolactate synthase 2 catalytic subunit -
  IHJ54_RS19450 (IHJ54_19435) ilvL 4395559..4395657 (-) 99 WP_071531109.1 ilv operon leader peptide -
  IHJ54_RS19455 (IHJ54_19440) comM 4396065..4397591 (+) 1527 WP_014916972.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IHJ54_RS19460 (IHJ54_19445) - 4397649..4397987 (-) 339 WP_010283921.1 DUF413 domain-containing protein -
  IHJ54_RS19465 (IHJ54_19450) hdfR 4398108..4398935 (+) 828 WP_010294681.1 HTH-type transcriptional regulator HdfR -
  IHJ54_RS19470 (IHJ54_19455) yjfF 4398957..4399919 (-) 963 WP_010294682.1 galactofuranose ABC transporter, permease protein YjfF -
  IHJ54_RS19475 (IHJ54_19460) ytfT 4399919..4400929 (-) 1011 WP_203449671.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  IHJ54_RS19480 (IHJ54_19465) ytfR 4400919..4402436 (-) 1518 WP_203449672.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55498.18 Da        Isoelectric Point: 6.6907

>NTDB_id=494107 IHJ54_RS19455 WP_014916972.1 4396065..4397591(+) (comM) [Pectobacterium brasiliense strain ZLMLSHJ5]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPPIEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGGRD
NIERKHLAEALSYRCMDRLLIQLHKNLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=494107 IHJ54_RS19455 WP_014916972.1 4396065..4397591(+) (comM) [Pectobacterium brasiliense strain ZLMLSHJ5]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCATATCAGCAG
TGGGCTACCAGCCCTAACGCTGGTGGGCTTACCAGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCTCTCA
TCAATTGCGGATTTACGTTTCCGGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGAGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCAGCCTCAGAACAAATCGATGGTGAGAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCTGCATTGGAAGCCATCAAATCAGGCC
GCCAGCTTATCCTTCCAGATGACAATAAACGGGAGATGACCCTGATACCGCAGGGTGAAGCGCTAATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGTGGAGAAGAGGAATTGCTCAGTTGCTCCGACATGACGCCCGTTCCACCGATCGAGGA
AGATACGCTCGATCTGAAGGATATCATCGGTCAGGAACAGGCTAAACGCGCGCTGGAAATCGCGGCGGCAGGCGGTCACA
ACCTGCTCTTGCTAGGGCCTCCGGGAACAGGGAAAACCATGCTGGCGAGTCGATTAGGCAATCTGATGCCACCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGACC
ATTCAGAGCGCCTCACCATAGTTCCTCCATGGCTGCGCTCGTGGGCGGAGGGTCGCTACCCAAACCCGGAGAAATCTCGC
TCGCCCACAACGGTGTACTATTTTTGGACGAATTACCGGAGTTTGAGCGACGCGTACTGGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCTAAAGTGTGCTACCCAGCACGGGTGCAGCTCGTCGCCGCAATGAA
TCCCAGCCCCTCAGGACACTATCAGGGCGTTCATAACCGGTTACCAGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTACTACCACCAGGGGTTTTATCTCAGCAGCATTAT
CAAGGCGAAAGCAGCGCGACAATTCGTGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTACTCACTTCACGTGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATCTTGAAAGTCGCGCGCACGATCGCTGACCTCGGCGGTCGGGAT
AATATTGAAAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGCTTGCTCATCCAGCTCCACAAAAACCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.229

99.606

0.64
  comM Vibrio cholerae strain A1552

64.215

99.016

0.636
  comM Glaesserella parasuis strain SC1401

63.261

100

0.634
  comM Vibrio campbellii strain DS40M4

62.846

99.606

0.626
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.214

100

0.469