Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SCH909_RS22765 Genome accession   NZ_CP063238
Coordinates   4780483..4781016 (-) Length   177 a.a.
NCBI ID   WP_033654707.1    Uniprot ID   -
Organism   Serratia marcescens strain SCH909     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4775483..4786016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCH909_RS22735 (SCH909_4458) - 4775798..4777168 (-) 1371 WP_060432023.1 NCS2 family permease -
  SCH909_RS22740 (SCH909_4459) - 4777501..4777908 (-) 408 WP_049195288.1 VOC family protein -
  SCH909_RS22745 (SCH909_4460) - 4777956..4778624 (-) 669 WP_033649718.1 glutathione S-transferase family protein -
  SCH909_RS22750 (SCH909_4461) - 4778621..4779064 (-) 444 WP_033636188.1 lipocalin-like domain-containing protein -
  SCH909_RS22755 (SCH909_4462) bhsA 4779261..4779521 (+) 261 WP_033636189.1 multiple stress resistance protein BhsA -
  SCH909_RS22760 (SCH909_4463) - 4779671..4780420 (+) 750 WP_060423765.1 3-oxoacyl-ACP reductase family protein -
  SCH909_RS22765 (SCH909_4464) ssb 4780483..4781016 (-) 534 WP_033654707.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SCH909_RS22770 (SCH909_4465) uvrA 4781295..4784123 (+) 2829 WP_060423768.1 excinuclease ABC subunit UvrA -
  SCH909_RS22775 (SCH909_4466) - 4784352..4785404 (+) 1053 WP_060423771.1 NAD(P)-dependent alcohol dehydrogenase -
  SCH909_RS22780 (SCH909_4467) maa 4785435..4785992 (-) 558 WP_060423774.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18865.76 Da        Isoelectric Point: 5.2358

>NTDB_id=494041 SCH909_RS22765 WP_033654707.1 4780483..4781016(-) (ssb) [Serratia marcescens strain SCH909]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=494041 SCH909_RS22765 WP_033654707.1 4780483..4781016(-) (ssb) [Serratia marcescens strain SCH909]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCGCGCCCGGCGCAGAACAGCGCTCCG
GCGGCCAGCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.824

100

0.78
  ssb Glaesserella parasuis strain SC1401

59.358

100

0.627
  ssb Neisseria meningitidis MC58

47.594

100

0.503
  ssb Neisseria gonorrhoeae MS11

47.594

100

0.503
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.362