Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   SSAL_RS05490 Genome accession   NC_017594
Coordinates   1209387..1210727 (-) Length   446 a.a.
NCBI ID   WP_014633203.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1204387..1215727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS05460 (Ssal_01215) yidA 1204835..1205641 (+) 807 WP_004182607.1 sugar-phosphatase -
  SSAL_RS05465 (Ssal_01216) - 1205641..1206855 (+) 1215 WP_014633201.1 aminoacyltransferase -
  SSAL_RS05470 (Ssal_01217) tnpA 1206994..1207467 (-) 474 WP_002891962.1 IS200/IS605 family transposase -
  SSAL_RS05475 - 1207703..1207979 (-) 277 Protein_1071 ISL3 family transposase -
  SSAL_RS05480 (Ssal_01218) - 1208151..1208510 (-) 360 WP_014633202.1 YbaN family protein -
  SSAL_RS05485 (Ssal_01219) vicX 1208569..1209381 (-) 813 WP_013990680.1 MBL fold metallo-hydrolase Regulator
  SSAL_RS05490 (Ssal_01220) vicK 1209387..1210727 (-) 1341 WP_014633203.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SSAL_RS05495 (Ssal_01221) vicR 1210720..1211427 (-) 708 WP_014633204.1 response regulator YycF Regulator
  SSAL_RS05500 (Ssal_01222) - 1211713..1212480 (+) 768 WP_014633205.1 amino acid ABC transporter ATP-binding protein -
  SSAL_RS05505 (Ssal_01223) - 1212490..1213323 (+) 834 WP_014633206.1 transporter substrate-binding domain-containing protein -
  SSAL_RS05510 (Ssal_01224) - 1213341..1214039 (+) 699 WP_014633207.1 amino acid ABC transporter permease -
  SSAL_RS05515 (Ssal_01225) - 1214051..1214701 (+) 651 WP_002886253.1 amino acid ABC transporter permease -
  SSAL_RS05520 (Ssal_01226) endA 1214779..1215660 (-) 882 WP_045001786.1 DNA/RNA non-specific endonuclease Machinery gene

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50935.25 Da        Isoelectric Point: 5.0678

>NTDB_id=49404 SSAL_RS05490 WP_014633203.1 1209387..1210727(-) (vicK) [Streptococcus salivarius 57.I]
MTSIGLNITSFELALLFTLLFVAFYFIFLAYRDYRRVKNIRKLTKRVKSLMAGNYNEELRLKGDPELLELADSLNDLSDV
FRLTHENLAQEKNRLSSVLSYMSDGVIATNRRGQITMINSTAQRLLNLDYETATQMSILDLLDGENPYTYSELLSKTPEI
LLSRRDANDEFVTLRVNFALIRKESGFISGLVAVLHDATEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDDGALDE
EIAPNFIKVSLDETNRMMRMISDLLALSRIDNKSTQLDVEMTNFTAFMTYILNRFDQIKSQETNTGKTYEIIRDYPVNSI
WVEIDTDKMTQVVDNILNNAIKYSPDGGKITVSMKTTDSQLIISISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGL
GLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLPYDKDAMMVDEWEM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=49404 SSAL_RS05490 WP_014633203.1 1209387..1210727(-) (vicK) [Streptococcus salivarius 57.I]
ATGACTAGTATTGGCTTAAACATCACAAGCTTTGAACTAGCCTTACTCTTTACGCTCCTCTTTGTGGCTTTCTACTTTAT
TTTTCTGGCTTATCGTGATTATCGACGAGTCAAAAATATTCGAAAGTTGACCAAGAGGGTCAAGTCCTTAATGGCAGGTA
ACTATAACGAGGAGTTACGCTTAAAGGGTGATCCAGAGCTTTTAGAGCTAGCTGACAGCTTGAATGATTTATCGGATGTC
TTTCGTTTGACGCATGAAAATCTAGCCCAGGAAAAAAACCGCTTATCATCAGTCCTTTCTTACATGAGTGATGGGGTTAT
TGCGACAAATCGTCGTGGTCAAATTACCATGATTAATAGCACAGCTCAGCGTTTGTTGAATCTAGATTATGAAACAGCGA
CACAGATGTCCATTTTAGATTTATTAGATGGTGAAAATCCCTATACTTACAGTGAATTGCTCTCTAAGACACCTGAAATT
CTTTTGTCACGTCGAGATGCCAACGATGAGTTTGTGACCCTACGTGTTAACTTTGCCCTTATTCGTAAAGAATCAGGCTT
TATCTCAGGTCTGGTTGCCGTTCTTCACGATGCCACTGAGCAAGAAAAAGAAGAACGTGAACGTCGACTTTTCGTCTCAA
ACGTTAGTCATGAGTTGCGTACACCTTTGACTTCTGTAAAATCCTATCTGGAGGCACTTGATGATGGAGCTCTCGATGAA
GAGATTGCTCCTAACTTTATCAAAGTTTCTTTGGATGAGACCAATCGTATGATGCGAATGATTTCTGACCTCTTGGCGCT
GTCTCGTATTGACAATAAGAGTACTCAACTTGACGTTGAGATGACCAATTTCACGGCCTTCATGACTTATATCTTGAACC
GTTTTGATCAGATTAAAAGTCAAGAAACCAATACAGGTAAAACTTACGAAATCATTCGAGATTATCCGGTAAACTCAATT
TGGGTGGAGATTGATACAGATAAGATGACCCAGGTCGTGGATAATATTCTTAATAATGCCATCAAGTATTCGCCTGATGG
TGGTAAGATTACAGTGTCTATGAAGACAACTGACTCACAGTTGATCATTTCTATTTCTGACCAAGGTTTGGGTATTCCTA
AGAAAGATTTGCCTTTGATTTTCGACCGTTTTTACCGTGTTGATAAGGCAAGAAGTCGTGCCCAAGGTGGAACTGGTCTA
GGCTTGTCCATTGCAAAAGAAATCATTAAACAACATAAGGGCTTTATTTGGGCTAAAAGTGAGTATGGTAAGGGTTCAAC
TTTTACAATTGTGCTTCCATATGACAAGGATGCCATGATGGTTGATGAATGGGAGATGTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(325-435)

His Kinase A (phospho-acceptor) domain (HisKA)

(208-272)

PAS fold (PAS)

(94-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

73.671

92.825

0.684
  micB Streptococcus pneumoniae Cp1015

67.898

97.085

0.659

Multiple sequence alignment