Detailed information NTG0493987

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: IM816_RS17390
• Genome accession: NZ_CP063231
• Coordinates: 4010285..4011784 (-)
• Length: 499 a.a.
• NCBI ID: WP_250339058.1
• Uniprot ID: -
• Organism: Luteibacter flocculans strain EIF3
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 4005285..4016784

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IM816_RS17375 (IM816_17345)	aceA	4005989..4007278 (+)	1290	WP_250339055.1	isocitrate lyase	-
IM816_RS17380 (IM816_17350)	-	4007587..4008900 (-)	1314	WP_250339056.1	N-acetylmuramoyl-L-alanine amidase	-
IM816_RS17385 (IM816_17355)	-	4009433..4010212 (+)	780	WP_250339057.1	YkgJ family cysteine cluster protein	-
IM816_RS17390 (IM816_17360)	comM	4010285..4011784 (-)	1500	WP_250339058.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
IM816_RS17395 (IM816_17365)	-	4011959..4012213 (-)	255	WP_072323613.1	accessory factor UbiK family protein	-
IM816_RS17400 (IM816_17370)	glnK	4012395..4012733 (+)	339	WP_072323612.1	P-II family nitrogen regulator	-
IM816_RS17405 (IM816_17375)	-	4012753..4013277 (-)	525	WP_250339059.1	DUF1453 domain-containing protein	-
IM816_RS17410 (IM816_17380)	gpmA	4013419..4014153 (-)	735	WP_072323610.1	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	-
IM816_RS17415 (IM816_17385)	-	4014340..4014987 (+)	648	WP_250339060.1	hypothetical protein	-
IM816_RS17420 (IM816_17390)	hemF	4015030..4015932 (-)	903	WP_250339061.1	oxygen-dependent coproporphyrinogen oxidase	-
IM816_RS17425 (IM816_17395)	-	4016032..4016742 (-)	711	WP_250339062.1	YdcF family protein	-

Sequence

Protein

• Length: 499 a.a.
• Molecular weight: 53717.40 Da
• Isoelectric Point: 6.5008

>NTDB_id=493987 IM816_RS17390 WP_250339058.1 4010285..4011784(-) (comM) [Luteibacter flocculans strain EIF3]
MSLAVTLSRAQEGVAAPQVVVEVHLSGGLPSTSIVGLPEAAVREARDRVRVAIQNTAFEYPNRRVTVNLAPAELPKDGGR
FDLAIALGILAAGSQVPRERLDDCEFLGELALSGELRAVTGILPALIRARRSGRRIVVPRANAAEAALIGEGDVLLADSL
AEVCAWLRGQAELTAPEAADFYDMPTCGPDMRDVRGQHQARRALEIAAAGGHHLLLIGPPGTGKTMLAERLPGILPPMIE
SEALESCAIRSLSGEDIDPSCWRRRPFRAPHHTASGVALVGGGSSPRPGEISLAHNGVLFLDELPEFSRHVLEVLREPLE
SGQIVISRAARQSTFPAEFQLVAAMNPCPCGYAGDSFHECRCTPDQVQRYRGRISGPLLDRIDLCVEVPRVPLAEVASVR
GPRDDDSATVRARVIAAREKALLRAGQANAELSVVNLERDCALQSSDREWLETALDKLGASARAYHRILRVARTIADLEG
GTGCVEKVHLAEAMHYRRF

Nucleotide

• Length: 1500 bp

>NTDB_id=493987 IM816_RS17390 WP_250339058.1 4010285..4011784(-) (comM) [Luteibacter flocculans strain EIF3]
ATGAGCCTCGCCGTCACCCTTTCGCGCGCGCAGGAAGGTGTCGCGGCGCCGCAAGTCGTCGTCGAAGTTCATCTTTCCGG
CGGTCTGCCATCCACGTCCATCGTCGGGCTGCCCGAGGCGGCGGTCCGCGAAGCGCGTGACCGGGTACGCGTTGCCATCC
AGAACACCGCCTTCGAGTATCCCAACCGACGGGTGACGGTAAACCTCGCACCTGCGGAGTTGCCGAAGGACGGCGGCCGA
TTCGACCTTGCCATTGCGCTGGGCATCCTGGCTGCGGGTTCGCAGGTGCCGCGCGAGCGACTCGACGATTGCGAGTTCCT
CGGCGAGCTGGCGCTGTCCGGCGAGTTGCGGGCGGTGACCGGAATCCTCCCTGCGCTGATCCGTGCCCGCCGCAGCGGCC
GGCGTATCGTGGTGCCACGCGCGAACGCTGCCGAAGCCGCGCTGATCGGCGAAGGCGATGTCCTGCTTGCCGATAGCCTT
GCCGAAGTCTGTGCCTGGCTTCGCGGCCAAGCGGAACTGACGGCTCCCGAGGCAGCCGACTTTTACGACATGCCGACCTG
TGGCCCGGACATGCGTGATGTCCGCGGCCAGCATCAAGCGCGCCGCGCGTTGGAGATCGCTGCGGCCGGTGGTCATCACC
TGCTGCTGATCGGTCCGCCCGGTACCGGCAAAACCATGCTGGCGGAGCGGCTTCCCGGCATCCTTCCGCCCATGATCGAG
TCCGAAGCGCTGGAGAGCTGCGCCATTCGTTCGCTGTCGGGTGAGGACATCGATCCGAGCTGCTGGCGTCGCCGCCCCTT
CCGCGCACCTCATCACACGGCGTCCGGTGTCGCGCTCGTGGGTGGCGGGTCGTCGCCGCGACCGGGCGAGATTTCCTTGG
CCCATAACGGCGTACTGTTCCTCGACGAGCTGCCCGAGTTCAGTCGCCACGTCCTGGAAGTGCTTCGGGAACCGTTGGAA
TCCGGGCAGATCGTGATCTCGCGGGCCGCACGGCAATCGACGTTCCCTGCCGAGTTCCAACTCGTCGCCGCGATGAATCC
TTGTCCCTGCGGGTACGCGGGTGACTCCTTTCATGAATGTCGCTGCACGCCCGATCAGGTGCAGCGCTATCGCGGCCGGA
TCTCCGGGCCGCTGCTCGACCGCATCGACCTCTGTGTGGAGGTGCCGCGCGTACCGCTTGCGGAAGTCGCATCCGTGCGT
GGTCCGCGCGACGATGACAGCGCCACCGTGCGTGCGCGCGTGATCGCCGCGCGTGAGAAGGCGCTGCTGCGGGCCGGCCA
GGCCAACGCCGAACTCAGTGTCGTGAACCTCGAACGCGACTGCGCCTTGCAGAGCTCCGACCGCGAATGGCTGGAGACGG
CGCTGGACAAGCTCGGTGCCTCTGCGCGTGCATACCACCGCATTCTCCGCGTGGCGCGCACGATCGCCGATCTCGAAGGC
GGAACGGGTTGCGTGGAGAAGGTGCACCTGGCGGAAGCGATGCACTACCGGCGGTTCTGA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-394)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (406-497)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	55.332	99.599	0.551
comM	Vibrio campbellii strain DS40M4	55.131	99.599	0.549
comM	Haemophilus influenzae Rd KW20	53.175	100	0.537
comM	Glaesserella parasuis strain SC1401	51.594	100	0.519
comM	Legionella pneumophila str. Paris	50.696	100	0.511
comM	Legionella pneumophila strain ERS1305867	50.696	100	0.511
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	44.177	99.8	0.441