Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   INR79_RS17930 Genome accession   NZ_CP063199
Coordinates   3951222..3952745 (-) Length   507 a.a.
NCBI ID   WP_022552154.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43132     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3946222..3957745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR79_RS17910 (INR79_17910) - 3947427..3948413 (+) 987 WP_223095400.1 serine/threonine protein kinase -
  INR79_RS17915 (INR79_17915) - 3948437..3949039 (+) 603 WP_004406510.1 thiol:disulfide interchange protein DsbA/DsbL -
  INR79_RS17920 (INR79_17920) - 3949108..3949992 (-) 885 WP_223095402.1 acyltransferase -
  INR79_RS17925 (INR79_17925) - 3950204..3951178 (+) 975 WP_022591111.1 DUF2860 family protein -
  INR79_RS17930 (INR79_17930) comM 3951222..3952745 (-) 1524 WP_022552154.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  INR79_RS17935 (INR79_17935) ilvG 3953201..3954847 (+) 1647 WP_223095404.1 acetolactate synthase 2 catalytic subunit -
  INR79_RS17940 (INR79_17940) ilvM 3954847..3955131 (+) 285 WP_004406520.1 acetolactate synthase 2 small subunit -
  INR79_RS17945 (INR79_17945) ilvE 3955147..3956094 (+) 948 WP_004406522.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54877.98 Da        Isoelectric Point: 7.2979

>NTDB_id=493821 INR79_RS17930 WP_022552154.1 3951222..3952745(-) (comM) [Vibrio sp. SCSIO 43132]
MALAIIHSRACVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSGFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIAITKLGQTEFIGELALSGELRSVKGVLPAALAANRENHCLVVPDANGDQAALVGADVHKSAANL
LDVCADLCGQKTLGLFQTPELHFAKESSRCLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPDMSE
DEAMESASVASLTQQEINQYNWKKRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQTILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTQVVKQRVNFAREKMQARSGKVNALLGTREIDKYCPLHKQDAEFLENALHQLGLSIRAYHRIIKVARTIADLSGSPQ
IERPHIAEALGYRAMDRLMKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=493821 INR79_RS17930 WP_022552154.1 3951222..3952745(-) (comM) [Vibrio sp. SCSIO 43132]
ATGGCGTTAGCGATCATTCATAGTCGGGCGTGTGTAGGAGTGGAAGCTCCAGAAGTGACGGTTGAGGTTCACATCAGCAA
CGGAATGCCAGGGTTTACGTTGGTAGGTTTACCAGAAACAACCGTGAAGGAATCTCGAGATCGGGTTCGCAGTGCGATTA
TTAATTCAGGCTTTGAGTTTCCAGCCAAGCGAATTACGGTCAATCTGGCTCCCGCTGACTTACCGAAAGAAGGTGGAAGG
TTTGATTTACCCATAGCGCTGGGTATTTTGGCGGCATCAGAGCAAATTGCCATTACCAAACTGGGTCAGACCGAGTTTAT
TGGTGAACTAGCCCTTTCGGGTGAACTTCGGTCTGTCAAAGGCGTGTTACCAGCGGCGTTAGCCGCAAACCGGGAAAACC
ATTGCTTGGTTGTGCCCGATGCGAATGGTGATCAGGCAGCGCTTGTAGGGGCGGATGTTCACAAATCGGCAGCCAATTTA
CTCGATGTATGCGCTGACTTGTGTGGGCAGAAAACACTGGGATTATTTCAAACCCCAGAACTTCATTTTGCAAAGGAATC
ATCACGATGCCTGCAAGACATCATTGGCCAGCAGCAAGGTAAGCGAGCACTAGAAATAGCCGCTGCGGGTAATCACAATT
TGCTTTTTCTTGGACCACCCGGCACGGGGAAAACCATGTTGGCGTCGCGACTGTGCGATTTGTTGCCCGACATGAGCGAA
GATGAGGCTATGGAAAGTGCGTCAGTTGCTTCTCTCACCCAGCAAGAGATTAACCAGTACAACTGGAAGAAGCGTCCATT
CCGTTCCCCACACCATTCGAGTTCTATGGCGGCATTGGTTGGCGGTGGATCGATTCCCCGTCCTGGTGAAATATCTTTAG
CTCATAACGGTTTGTTATTTTTAGATGAGATGCCGGAGTTTGAACGAAAAGTTCTGGATTCACTCAGAGAACCACTGGAA
TCCGGTGAGATCATCATTTCTCGCGCCGCGGGGAAAACCCGTTTTCCTGCCCGATTCCAGTTAGTTGGGGCATTGAACCC
TAGCCCTACGGGGTACTATGAGGGGAATCAAGCTCGAGTGAACCCTCAGACGATCCTGCGGTATTTGGGGCGACTATCAG
GGCCTTTACTTGATCGCTTTGATATGTCACTGGAAATACCGGCACTGCCGAAAGGTACGTTATCAGAAGGTGGCGATCGC
GGAGAGCCGACTCAGGTGGTGAAACAGAGGGTCAACTTTGCCCGAGAGAAAATGCAGGCTCGCAGTGGAAAAGTGAATGC
GCTACTGGGTACACGTGAAATCGACAAATACTGTCCTTTGCATAAGCAAGATGCAGAGTTTCTGGAGAACGCATTGCACC
AACTCGGGCTATCCATACGCGCTTATCATCGAATCATCAAAGTGGCACGTACGATTGCAGATTTGTCAGGAAGCCCTCAA
ATCGAGCGGCCACATATTGCTGAAGCGTTGGGGTATCGAGCGATGGACAGATTAATGAAGCAACTGACGGCTCAAGCGGT
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Vibrio cholerae strain A1552

83.826

100

0.838
  comM Glaesserella parasuis strain SC1401

63.137

100

0.635
  comM Haemophilus influenzae Rd KW20

63.314

100

0.633
  comM Legionella pneumophila str. Paris

49.899

98.028

0.489
  comM Legionella pneumophila strain ERS1305867

49.899

98.028

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.333

100

0.436