Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   INR79_RS15560 Genome accession   NZ_CP063199
Coordinates   3474845..3475387 (-) Length   180 a.a.
NCBI ID   WP_022551628.1    Uniprot ID   U4K8W8
Organism   Vibrio sp. SCSIO 43132     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3469845..3480387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR79_RS15540 (INR79_15540) - 3470259..3470588 (-) 330 WP_004405138.1 hypothetical protein -
  INR79_RS15545 (INR79_15545) pilO 3470581..3471225 (-) 645 WP_022613261.1 type 4a pilus biogenesis protein PilO -
  INR79_RS15550 (INR79_15550) - 3471228..3472658 (-) 1431 WP_022595487.1 PilN domain-containing protein -
  INR79_RS15555 (INR79_15555) csrD 3472669..3474654 (-) 1986 WP_223095019.1 RNase E specificity factor CsrD -
  INR79_RS15560 (INR79_15560) ssb 3474845..3475387 (-) 543 WP_022551628.1 single-stranded DNA-binding protein Machinery gene
  INR79_RS15565 (INR79_15565) - 3475780..3476421 (+) 642 WP_223095021.1 LuxR C-terminal-related transcriptional regulator -
  INR79_RS15570 (INR79_15570) galU 3476513..3477382 (+) 870 WP_004405144.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  INR79_RS15575 (INR79_15575) uvrA 3477513..3480335 (+) 2823 WP_223095023.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19875.94 Da        Isoelectric Point: 4.9269

>NTDB_id=493817 INR79_RS15560 WP_022551628.1 3474845..3475387(-) (ssb) [Vibrio sp. SCSIO 43132]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYTTEVVVQGFNGVMQMLGGRQQGQGAPGQGMGGQQQQGGWGQPQQPAQQQSYQQPAAPQQQAP
QQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=493817 INR79_RS15560 WP_022551628.1 3474845..3475387(-) (ssb) [Vibrio sp. SCSIO 43132]
ATGGCCAGCCGTGGAATTAATAAAGTTATTTTGGTGGGGAATTTAGGAAATGACCCTGAAATTCGTTATATGCCGAGTGG
CGGCGCGGTGGCGAATATTACAATTGCGACCTCTGAATCGTGGCGCGACAAAGCGACTGGCGAACAGCGCGAAAAGACAG
AATGGCACCGTGTGGCACTGTTTGGAAAGCTAGCAGAAGTAGCGGGTGAGTACCTTCGTAAAGGTTCTCAGGTTTACATT
GAAGGTCAGCTTCAGACTCGTAAATGGCAAGATCAGAATGGTCAGGATCGCTACACAACAGAAGTGGTTGTACAAGGCTT
CAATGGTGTGATGCAGATGCTGGGTGGTCGCCAACAAGGTCAGGGTGCACCGGGTCAAGGAATGGGAGGTCAGCAGCAAC
AAGGTGGTTGGGGACAGCCTCAACAGCCTGCACAGCAGCAATCTTACCAGCAGCCAGCTGCGCCTCAGCAACAAGCACCG
CAACAGGCTCAACCACAATATAATGAGCCACCAATGGATTTTGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U4K8W8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.11

100

0.806
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.583
  ssb Neisseria meningitidis MC58

44.068

98.333

0.433
  ssb Neisseria gonorrhoeae MS11

44.068

98.333

0.433
  ssb Latilactobacillus sakei subsp. sakei 23K

35.912

100

0.361