Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   INP89_RS08080 Genome accession   NZ_CP063127
Coordinates   1633203..1634000 (+) Length   265 a.a.
NCBI ID   WP_116967004.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M1C112_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1628203..1639000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP89_RS08060 (INP89_08055) recR 1628366..1628968 (-) 603 WP_197541618.1 recombination mediator RecR -
  INP89_RS08065 (INP89_08060) - 1629101..1629430 (-) 330 WP_105904681.1 YbaB/EbfC family nucleoid-associated protein -
  INP89_RS08070 (INP89_08065) - 1629589..1630434 (-) 846 WP_197541619.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  INP89_RS08075 (INP89_08070) - 1630510..1633104 (-) 2595 WP_197541620.1 penicillin-binding protein 1A -
  INP89_RS08080 (INP89_08075) comA 1633203..1634000 (+) 798 WP_116967004.1 pilus assembly protein PilM Machinery gene
  INP89_RS08085 (INP89_08080) comB 1634001..1634510 (+) 510 WP_197541621.1 competence protein B Machinery gene
  INP89_RS08090 (INP89_08085) comC 1634507..1635028 (+) 522 WP_048949854.1 competence protein ComC Machinery gene
  INP89_RS08095 (INP89_08090) comD 1635025..1635438 (+) 414 WP_048949853.1 pilus assembly protein PilP Machinery gene
  INP89_RS08100 (INP89_08095) comE 1635448..1636785 (+) 1338 WP_197541622.1 type IV pilus secretin PilQ family protein Machinery gene
  INP89_RS08105 (INP89_08100) - 1636798..1637484 (+) 687 WP_116938794.1 ComF family protein -
  INP89_RS08110 (INP89_08105) nfuA 1637560..1638156 (+) 597 WP_005652130.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31438.71 Da        Isoelectric Point: 5.6305

>NTDB_id=493238 INP89_RS08080 WP_116967004.1 1633203..1634000(+) (comA) [Haemophilus influenzae strain M1C112_1]
MQFSLKNYLTLQIGIHRKQGYFDFVWFDDLEQPQSYQIFVNDRDFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
ILPQVLNAQECHQQCKFVIEKELPISLDELWFDYRSTSLKQGFRLDVTAIRKSTAQTYLQDFQPFKINVLDVASNAILRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLPEHWQRV
ETELPFIALGNALWQKDLYQQKVGN

Nucleotide


Download         Length: 798 bp        

>NTDB_id=493238 INP89_RS08080 WP_116967004.1 1633203..1634000(+) (comA) [Haemophilus influenzae strain M1C112_1]
ATGCAATTCTCCCTGAAAAATTACCTCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAACAGCCACAAAGTTATCAAATTTTTGTTAATGATCGTGATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTACAGTTTGTGGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATTTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTCTTT
AGATGAATTATGGTTTGATTATCGTTCTACCTCGTTAAAGCAAGGTTTTCGATTAGACGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCGTCAAATGCTATTTTGCGTGCA
TTTCAGTATTTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGTTTGGCGAT
TTGTGAAAGATCGCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGGCAACTTGAACAAGTTTTTGTGTATCAAATTCCCTCAAGTCATACGCCATTACCAGAACACTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCCCTGGGCAACGCGCTATGGCAAAAAGATTTATATCAACAAAAAGTAGGTAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

97.736

100

0.977
  comA Haemophilus influenzae Rd KW20

94.34

100

0.943