Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   INP94_RS01675 Genome accession   NZ_CP063120
Coordinates   352619..353086 (+) Length   155 a.a.
NCBI ID   WP_197543832.1    Uniprot ID   A0A7M1NXH7
Organism   Haemophilus parainfluenzae strain M1C137_2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 347619..358086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP94_RS01665 (INP94_01665) - 348042..349568 (+) 1527 WP_197543830.1 DHA2 family efflux MFS transporter permease subunit -
  INP94_RS01670 (INP94_01670) uvrA 349625..352456 (-) 2832 WP_197543831.1 excinuclease ABC subunit UvrA -
  INP94_RS01675 (INP94_01675) ssb 352619..353086 (+) 468 WP_197543832.1 single-stranded DNA-binding protein Machinery gene
  INP94_RS01680 (INP94_01680) - 353180..354727 (-) 1548 WP_197543833.1 multicopper oxidase family protein -
  INP94_RS01685 (INP94_01685) - 354739..355194 (-) 456 WP_005612095.1 DUF411 domain-containing protein -
  INP94_RS01690 (INP94_01690) - 356064..356654 (+) 591 WP_197543834.1 hypothetical protein -
  INP94_RS01695 (INP94_01695) - 356879..357673 (+) 795 WP_197543835.1 formate/nitrite transporter family protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17293.20 Da        Isoelectric Point: 5.2630

>NTDB_id=493071 INP94_RS01675 WP_197543832.1 352619..353086(+) (ssb) [Haemophilus parainfluenzae strain M1C137_2]
MAGINKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVLYRRLAEIAGQYLRKGSQVYVEG
RLKTRKWQDNNGQDRYTTEIQGDNLQMLGSRNQEMGGYAPAQSAPQPSYQSRPAQSAPAPQAEPPMDAFDDNIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=493071 INP94_RS01675 WP_197543832.1 352619..353086(+) (ssb) [Haemophilus parainfluenzae strain M1C137_2]
ATGGCAGGTATTAATAAAGTAATCATCGTGGGTAATTTAGGTAATGATCCTGAAATCCGCACGATGCCAAATGGCGAAGC
AGTAGCAAATATCAGCGTGGCAACAAGTGAAAGCTGGACAGATAAAAACACAGGAGAACGTCGTGAAGTCACCGAATGGC
ACCGTATCGTGTTATATCGTCGTTTAGCGGAAATTGCGGGTCAATACTTACGCAAAGGTTCACAAGTTTATGTTGAAGGT
CGTTTAAAAACCCGTAAATGGCAAGATAACAATGGCCAAGATCGTTACACTACTGAAATCCAAGGTGATAACTTACAAAT
GTTAGGTAGTCGCAATCAAGAGATGGGCGGTTATGCACCTGCACAATCAGCACCACAACCAAGCTATCAATCTCGTCCAG
CACAATCTGCGCCAGCACCACAAGCTGAGCCACCAATGGATGCATTTGATGACAACATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1NXH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

66.111

100

0.768
  ssb Vibrio cholerae strain A1552

58.286

100

0.658
  ssb Neisseria meningitidis MC58

50.867

100

0.568
  ssb Neisseria gonorrhoeae MS11

50.867

100

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

33.14

100

0.368