Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   INP95_RS00270 Genome accession   NZ_CP063117
Coordinates   56335..57012 (+) Length   225 a.a.
NCBI ID   WP_049384522.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C142_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51335..62012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP95_RS00245 (INP95_00245) rppH 51493..52086 (-) 594 WP_049384519.1 RNA pyrophosphohydrolase -
  INP95_RS00250 (INP95_00250) ampD 52571..53134 (-) 564 WP_049371639.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  INP95_RS00255 (INP95_00255) pilA 53277..53720 (+) 444 WP_049369499.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  INP95_RS00260 (INP95_00260) pilB 53727..55106 (+) 1380 WP_049384520.1 GspE/PulE family protein Machinery gene
  INP95_RS00265 (INP95_00265) pilC 55115..56338 (+) 1224 WP_049384521.1 type II secretion system F family protein Machinery gene
  INP95_RS00270 (INP95_00270) pilD 56335..57012 (+) 678 WP_049384522.1 prepilin peptidase Machinery gene
  INP95_RS00275 (INP95_00275) coaE 57101..57721 (+) 621 WP_049384523.1 dephospho-CoA kinase -
  INP95_RS00280 (INP95_00280) yacG 57714..57920 (+) 207 WP_005695505.1 DNA gyrase inhibitor YacG -
  INP95_RS00285 (INP95_00285) - 57917..58198 (+) 282 WP_049384524.1 GNAT family N-acetyltransferase -
  INP95_RS00290 (INP95_00290) rhlB 58289..59548 (+) 1260 WP_070776274.1 ATP-dependent RNA helicase RhlB -
  INP95_RS00295 (INP95_00295) mreD 59589..60077 (-) 489 WP_049364929.1 rod shape-determining protein MreD -
  INP95_RS00300 (INP95_00300) mreC 60077..61141 (-) 1065 WP_197559694.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26030.92 Da        Isoelectric Point: 7.0785

>NTDB_id=493032 INP95_RS00270 WP_049384522.1 56335..57012(+) (pilD) [Haemophilus parainfluenzae strain M1C142_1]
MMTFAFFLLGGFAGIFAWLYIDHFIPNLQQEIYQNYIELYPENRPIFHSEKAAIQSQKCGHIFLYFLGFGLCFAALYYFL
QDELFTLWLAITLSLIFVISWLDWHYQLISPTPCLFLFFLGLFGAHQKLSILTLSQSLESAVSFFGVFYIIYHLSKWFYK
KEALGRGDYWLALGIGTYLTIAHLPLFLFIACLLGIIGYWISRKPVLPFAPFLCLSLIITSAITL

Nucleotide


Download         Length: 678 bp        

>NTDB_id=493032 INP95_RS00270 WP_049384522.1 56335..57012(+) (pilD) [Haemophilus parainfluenzae strain M1C142_1]
ATGATGACATTCGCCTTTTTCTTATTGGGAGGTTTCGCTGGCATCTTTGCTTGGCTTTATATTGATCATTTTATCCCTAA
TCTCCAACAAGAAATTTATCAGAACTATATCGAACTTTATCCTGAAAACAGACCCATTTTCCATAGCGAAAAAGCAGCCA
TTCAATCTCAAAAGTGTGGTCATATTTTCCTTTATTTTTTAGGGTTTGGACTCTGTTTTGCTGCACTCTATTATTTTCTT
CAGGATGAATTATTTACTTTATGGCTCGCGATTACGCTTAGTCTCATCTTTGTTATCAGTTGGCTAGACTGGCACTATCA
ACTGATTTCACCTACACCTTGCCTGTTTTTATTTTTCCTGGGTTTATTCGGCGCACATCAAAAACTTTCAATTCTGACGC
TTTCTCAAAGTTTAGAAAGTGCGGTTAGTTTTTTCGGTGTTTTTTATATCATCTATCATTTGTCTAAATGGTTTTATAAG
AAGGAAGCTTTAGGCCGTGGCGATTATTGGCTTGCTTTGGGAATCGGCACTTATCTCACCATCGCGCACTTACCACTTTT
CTTATTCATTGCCTGTCTATTAGGCATCATAGGTTATTGGATTTCTCGTAAACCTGTTTTACCTTTCGCGCCCTTTCTTT
GCTTATCTTTAATCATCACCAGTGCAATAACCCTATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

52.941

98.222

0.52
  pilD Haemophilus influenzae 86-028NP

52.036

98.222

0.511