Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   INP99_RS01480 Genome accession   NZ_CP063111
Coordinates   316513..316980 (+) Length   155 a.a.
NCBI ID   WP_049357843.1    Uniprot ID   A0A1B8QYE6
Organism   Haemophilus parainfluenzae strain M1C152_1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 311513..321980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP99_RS01470 (INP99_01465) - 311937..313463 (+) 1527 WP_197542478.1 DHA2 family efflux MFS transporter permease subunit -
  INP99_RS01475 (INP99_01470) uvrA 313519..316350 (-) 2832 WP_197542479.1 excinuclease ABC subunit UvrA -
  INP99_RS01480 (INP99_01475) ssb 316513..316980 (+) 468 WP_049357843.1 single-stranded DNA-binding protein Machinery gene
  INP99_RS01485 (INP99_01480) - 317074..318621 (-) 1548 WP_197542480.1 multicopper oxidase family protein -
  INP99_RS01490 (INP99_01485) - 318632..319087 (-) 456 WP_005612095.1 DUF411 domain-containing protein -
  INP99_RS01495 (INP99_01490) - 319957..320547 (+) 591 WP_197542481.1 hypothetical protein -
  INP99_RS01500 (INP99_01495) - 320767..321561 (+) 795 WP_197542482.1 formate/nitrite transporter family protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17293.20 Da        Isoelectric Point: 5.2630

>NTDB_id=492913 INP99_RS01480 WP_049357843.1 316513..316980(+) (ssb) [Haemophilus parainfluenzae strain M1C152_1]
MAGINKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVLYRRLAEIAGQYLRKGSQVYVEG
RLKTRKWQDNNGQDRYTTEIQGDNLQMLGGRNQEMGGYTPAQSAPQPSYQSRPAQSAPAPQAEPPMDAFDDNIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=492913 INP99_RS01480 WP_049357843.1 316513..316980(+) (ssb) [Haemophilus parainfluenzae strain M1C152_1]
ATGGCAGGTATTAATAAAGTAATCATCGTGGGTAATTTAGGTAATGATCCTGAAATCCGCACGATGCCAAATGGCGAAGC
GGTAGCAAATATCAGCGTGGCAACAAGTGAAAGCTGGACAGATAAAAACACCGGCGAACGTCGTGAAGTGACCGAATGGC
ACCGTATCGTGTTATATCGTCGTTTAGCAGAAATTGCGGGGCAATACTTACGCAAAGGTTCACAAGTTTATGTTGAAGGT
CGTTTAAAAACCCGTAAATGGCAAGATAACAACGGCCAAGATCGTTACACCACTGAAATCCAAGGTGATAACTTACAAAT
GTTAGGTGGTCGTAATCAAGAGATGGGCGGTTATACACCTGCACAATCAGCACCACAACCAAGCTATCAATCTCGTCCAG
CACAATCTGCACCAGCACCACAAGCTGAGCCACCAATGGACGCATTTGATGACAACATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8QYE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

65

100

0.755
  ssb Vibrio cholerae strain A1552

58.857

100

0.665
  ssb Neisseria meningitidis MC58

51.445

100

0.574
  ssb Neisseria gonorrhoeae MS11

51.445

100

0.574
  ssb Latilactobacillus sakei subsp. sakei 23K

33.721

100

0.374