Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | INP99_RS01270 | Genome accession | NZ_CP063111 |
| Coordinates | 263622..263972 (-) | Length | 116 a.a. |
| NCBI ID | WP_049364011.1 | Uniprot ID | A0AB36IN43 |
| Organism | Haemophilus parainfluenzae strain M1C152_1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 258622..268972
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| INP99_RS01250 (INP99_01245) | - | 258757..259260 (-) | 504 | WP_197542453.1 | surface-adhesin E family protein | - |
| INP99_RS01255 (INP99_01250) | pflA | 259315..260055 (-) | 741 | WP_054420261.1 | pyruvate formate lyase 1-activating protein | - |
| INP99_RS01260 (INP99_01255) | pflB | 260185..262497 (-) | 2313 | WP_065244605.1 | formate C-acetyltransferase | - |
| INP99_RS01265 (INP99_01260) | focA | 262553..263407 (-) | 855 | WP_049372705.1 | formate transporter FocA | - |
| INP99_RS01270 (INP99_01265) | comE1/comEA | 263622..263972 (-) | 351 | WP_049364011.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| INP99_RS01275 (INP99_01270) | - | 264117..264434 (-) | 318 | WP_005698058.1 | heavy metal-binding domain-containing protein | - |
| INP99_RS01280 (INP99_01275) | rdgB | 264473..265072 (-) | 600 | WP_197542454.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| INP99_RS01285 (INP99_01280) | - | 265204..265575 (+) | 372 | WP_049357924.1 | DUF305 domain-containing protein | - |
| INP99_RS01290 (INP99_01285) | ispH | 265624..266568 (-) | 945 | WP_197542455.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| INP99_RS01295 (INP99_01290) | lspA | 266565..267056 (-) | 492 | WP_049376184.1 | signal peptidase II | - |
| INP99_RS01300 (INP99_01295) | glmU | 267173..268543 (-) | 1371 | WP_197542456.1 | bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU | - |
Sequence
Protein
Download Length: 116 a.a. Molecular weight: 12766.60 Da Isoelectric Point: 9.6912
>NTDB_id=492910 INP99_RS01270 WP_049364011.1 263622..263972(-) (comE1/comEA) [Haemophilus parainfluenzae strain M1C152_1]
MKLMKHLFSSLFVATTMLSSQVFAEEKVAEQAQPQAQVQQQTASQTTQQAVSDKLNINTASASEIQKALIGIGAKKAEAI
VQYREKHGNFTMAEQLLEVQGIGKATLEKNRDRIAF
MKLMKHLFSSLFVATTMLSSQVFAEEKVAEQAQPQAQVQQQTASQTTQQAVSDKLNINTASASEIQKALIGIGAKKAEAI
VQYREKHGNFTMAEQLLEVQGIGKATLEKNRDRIAF
Nucleotide
Download Length: 351 bp
>NTDB_id=492910 INP99_RS01270 WP_049364011.1 263622..263972(-) (comE1/comEA) [Haemophilus parainfluenzae strain M1C152_1]
ATGAAATTGATGAAACATTTATTTAGTTCATTATTTGTTGCGACCACAATGTTGAGCTCGCAAGTGTTTGCAGAAGAAAA
GGTGGCTGAACAGGCTCAACCTCAAGCGCAAGTTCAGCAACAAACCGCATCACAAACTACACAACAAGCAGTGAGTGATA
AATTAAATATCAATACCGCCAGTGCATCAGAAATTCAAAAAGCACTAATTGGTATTGGTGCGAAAAAGGCGGAAGCCATT
GTGCAGTATCGTGAAAAGCACGGTAATTTCACTATGGCAGAACAATTGCTTGAAGTACAAGGCATTGGTAAAGCAACGTT
AGAGAAAAACCGCGATCGTATCGCGTTTTAA
ATGAAATTGATGAAACATTTATTTAGTTCATTATTTGTTGCGACCACAATGTTGAGCTCGCAAGTGTTTGCAGAAGAAAA
GGTGGCTGAACAGGCTCAACCTCAAGCGCAAGTTCAGCAACAAACCGCATCACAAACTACACAACAAGCAGTGAGTGATA
AATTAAATATCAATACCGCCAGTGCATCAGAAATTCAAAAAGCACTAATTGGTATTGGTGCGAAAAAGGCGGAAGCCATT
GTGCAGTATCGTGAAAAGCACGGTAATTTCACTATGGCAGAACAATTGCTTGAAGTACAAGGCATTGGTAAAGCAACGTT
AGAGAAAAACCGCGATCGTATCGCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
67.257 |
97.414 |
0.655 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.637 |
97.414 |
0.552 |
| comEA | Acinetobacter baylyi ADP1 |
38.583 |
100 |
0.422 |
| comEA | Vibrio cholerae C6706 |
42.593 |
93.103 |
0.397 |
| comEA | Vibrio cholerae strain A1552 |
42.593 |
93.103 |
0.397 |