Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   INQ00_RS01310 Genome accession   NZ_CP063110
Coordinates   264509..264859 (-) Length   116 a.a.
NCBI ID   WP_049364011.1    Uniprot ID   A0AB36IN43
Organism   Haemophilus parainfluenzae strain M1C160_1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 259509..269859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ00_RS01295 (INQ00_01295) - 260008..260406 (-) 399 WP_197547065.1 hypothetical protein -
  INQ00_RS01300 (INQ00_01300) pflB 261072..263384 (-) 2313 WP_065244605.1 formate C-acetyltransferase -
  INQ00_RS01305 (INQ00_01305) focA 263440..264294 (-) 855 WP_049372705.1 formate transporter FocA -
  INQ00_RS01310 (INQ00_01310) comE1/comEA 264509..264859 (-) 351 WP_049364011.1 helix-hairpin-helix domain-containing protein Machinery gene
  INQ00_RS01315 (INQ00_01315) - 265004..265321 (-) 318 WP_049374698.1 heavy metal-binding domain-containing protein -
  INQ00_RS01320 (INQ00_01320) rdgB 265360..265959 (-) 600 WP_197547066.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  INQ00_RS01325 (INQ00_01325) - 266091..266462 (+) 372 WP_049357924.1 DUF305 domain-containing protein -
  INQ00_RS01330 (INQ00_01330) ispH 266511..267455 (-) 945 WP_049372702.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  INQ00_RS01335 (INQ00_01335) lspA 267452..267943 (-) 492 WP_049367275.1 signal peptidase II -
  INQ00_RS01340 (INQ00_01340) glmU 268060..269430 (-) 1371 WP_126469722.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 12766.60 Da        Isoelectric Point: 9.6912

>NTDB_id=492879 INQ00_RS01310 WP_049364011.1 264509..264859(-) (comE1/comEA) [Haemophilus parainfluenzae strain M1C160_1]
MKLMKHLFSSLFVATTMLSSQVFAEEKVAEQAQPQAQVQQQTASQTTQQAVSDKLNINTASASEIQKALIGIGAKKAEAI
VQYREKHGNFTMAEQLLEVQGIGKATLEKNRDRIAF

Nucleotide


Download         Length: 351 bp        

>NTDB_id=492879 INQ00_RS01310 WP_049364011.1 264509..264859(-) (comE1/comEA) [Haemophilus parainfluenzae strain M1C160_1]
ATGAAATTGATGAAACATTTATTTAGTTCATTATTTGTTGCGACCACAATGTTGAGCTCGCAAGTGTTTGCAGAAGAAAA
GGTGGCTGAACAGGCTCAACCTCAAGCGCAAGTTCAGCAACAAACCGCATCACAAACTACACAACAAGCAGTGAGTGATA
AATTAAATATCAATACCGCCAGTGCATCAGAAATTCAAAAAGCACTAATTGGTATTGGTGCGAAAAAGGCGGAAGCCATT
GTGCAGTATCGTGAAAAGCACGGTAATTTCACTATGGCAGAACAATTGCTTGAAGTACAAGGCATTGGTAAAGCAACGTT
AGAGAAAAACCGCGATCGTATCGCGTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(53-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

67.257

97.414

0.655
  comEA/comE1 Glaesserella parasuis strain SC1401

56.637

97.414

0.552
  comEA Acinetobacter baylyi ADP1

38.583

100

0.422
  comEA Vibrio cholerae C6706

42.593

93.103

0.397
  comEA Vibrio cholerae strain A1552

42.593

93.103

0.397