Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   INQ00_RS00265 Genome accession   NZ_CP063110
Coordinates   53672..54349 (+) Length   225 a.a.
NCBI ID   WP_197546951.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C160_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 48672..59349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ00_RS00240 (INQ00_00240) rppH 48961..49423 (-) 463 Protein_47 RNA pyrophosphohydrolase -
  INQ00_RS00245 (INQ00_00245) ampD 49906..50469 (-) 564 WP_197546947.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  INQ00_RS00250 (INQ00_00250) pilA 50614..51057 (+) 444 WP_197546948.1 prepilin peptidase-dependent pilin Machinery gene
  INQ00_RS00255 (INQ00_00255) pilB 51064..52443 (+) 1380 WP_197546949.1 GspE/PulE family protein Machinery gene
  INQ00_RS00260 (INQ00_00260) pilC 52452..53675 (+) 1224 WP_197546950.1 type II secretion system F family protein Machinery gene
  INQ00_RS00265 (INQ00_00265) pilD 53672..54349 (+) 678 WP_197546951.1 prepilin peptidase Machinery gene
  INQ00_RS00270 (INQ00_00270) coaE 54436..55056 (+) 621 WP_197546952.1 dephospho-CoA kinase -
  INQ00_RS00275 (INQ00_00275) yacG 55049..55255 (+) 207 WP_197546953.1 DNA gyrase inhibitor YacG -
  INQ00_RS00280 (INQ00_00280) - 55252..55533 (+) 282 WP_197546954.1 GNAT family N-acetyltransferase -
  INQ00_RS00285 (INQ00_00285) rhlB 55624..56883 (+) 1260 WP_197546955.1 ATP-dependent RNA helicase RhlB -
  INQ00_RS00290 (INQ00_00290) mreD 56925..57413 (-) 489 WP_111327318.1 rod shape-determining protein MreD -
  INQ00_RS00295 (INQ00_00295) mreC 57413..58477 (-) 1065 WP_197546956.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26041.91 Da        Isoelectric Point: 6.4738

>NTDB_id=492876 INQ00_RS00265 WP_197546951.1 53672..54349(+) (pilD) [Haemophilus parainfluenzae strain M1C160_1]
MMILAFFLLGGLAGIFVWLYIDRFIPNLQQEIYQNYIELYPENSPIFHSEKAAIQSQKCGHICLYFLGFGLSFAVLYYFL
QDELFTLWLAITLSLLFVISWLDWHYQLISPTPCLFLFFLGLFGAHQEFSILTLSQSLESAVSFFGIFYIIYHLSKWFYK
KEALGRGDYWFALGIGTYLTITHLPLFLFIACLLGIMAYWISRKSVLPFGPFLCLSLIITSAITL

Nucleotide


Download         Length: 678 bp        

>NTDB_id=492876 INQ00_RS00265 WP_197546951.1 53672..54349(+) (pilD) [Haemophilus parainfluenzae strain M1C160_1]
ATGATGATATTAGCCTTTTTCTTATTGGGTGGTTTAGCGGGTATCTTTGTTTGGCTTTATATTGATCGTTTTATCCCCAA
TCTACAACAAGAAATTTATCAGAACTATATCGAACTTTATCCTGAAAACAGTCCTATTTTCCATAGCGAAAAAGCAGCGA
TTCAATCTCAAAAGTGCGGTCATATTTGTCTTTATTTTTTAGGGTTTGGACTCAGTTTTGCTGTACTCTATTATTTTCTT
CAGGATGAATTATTTACTTTATGGCTAGCGATTACGCTTAGTCTACTGTTTGTTATCAGTTGGCTAGACTGGCATTATCA
ACTGATTTCACCGACACCTTGCCTCTTTTTATTTTTCCTAGGTTTATTCGGCGCACATCAAGAATTTTCAATTCTGACGC
TTTCTCAAAGTTTAGAAAGTGCGGTTAGTTTTTTCGGTATTTTTTATATTATCTATCATTTGTCTAAATGGTTTTATAAG
AAGGAAGCGTTAGGCCGTGGCGATTATTGGTTCGCTTTAGGAATCGGGACTTATCTCACCATCACACATTTACCACTTTT
CTTATTCATTGCTTGTCTATTAGGCATAATGGCTTATTGGATTTCTCGTAAGTCCGTTTTACCTTTCGGTCCCTTTCTTT
GCTTATCTTTAATCATCACCAGTGCAATAACCCTATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(91-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

51.584

98.222

0.507
  pilD Haemophilus influenzae Rd KW20

51.584

98.222

0.507