Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   INP81_RS01050 Genome accession   NZ_CP063057
Coordinates   242614..244152 (+) Length   512 a.a.
NCBI ID   WP_197577540.1    Uniprot ID   -
Organism   Comamonas thiooxydans strain ZDHYF418     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 237614..249152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP81_RS01030 (INP81_01030) - 238339..239667 (-) 1329 WP_054073337.1 sulfatase -
  INP81_RS01035 (INP81_01035) - 239781..240773 (-) 993 WP_054073454.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  INP81_RS01040 (INP81_01040) - 240914..241885 (-) 972 WP_054073336.1 tripartite tricarboxylate transporter substrate binding protein -
  INP81_RS01045 (INP81_01045) - 241978..242529 (+) 552 WP_046461166.1 MarR family winged helix-turn-helix transcriptional regulator -
  INP81_RS01050 (INP81_01050) comM 242614..244152 (+) 1539 WP_197577540.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  INP81_RS01055 (INP81_01055) - 244166..245095 (-) 930 WP_054073331.1 LysR substrate-binding domain-containing protein -
  INP81_RS01060 (INP81_01060) - 245207..246385 (+) 1179 WP_012836695.1 YbfB/YjiJ family MFS transporter -
  INP81_RS01065 (INP81_01065) - 246420..247487 (+) 1068 WP_054073330.1 NAD(P)H-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54746.71 Da        Isoelectric Point: 7.3506

>NTDB_id=492619 INP81_RS01050 WP_197577540.1 242614..244152(+) (comM) [Comamonas thiooxydans strain ZDHYF418]
MGLALVQSRALLGLQAPAVTVEVHLANGLPSFTLVGLADVEVKEARERVRAAIVNAGLEFPNNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAQRLADYEFAGELSLTGALRPVRGALATALALQRQQQRVRLVLPPDSALEAAFVPAIEVFGA
AHLLDVVRQFIAHDATLAEQGDGVEGWQRVHSRPAEASLPSLDLREVRGQMQAKRALEIAAAGAHGVLMIGPPGSGKSML
AQRFAGLLPGMTDEEALEAAAIASLSGRFTPQLWRQRPFAAPHHTASSIALVGGGSPPRPGEISYAHCGALFLDELPEFA
RSALEALREPLETGRITIVRAVQRAEFPARFQLVAAMNPCPCGFWGSRIRACRCSPDQVARYQARISGPLLDRIDLHVEV
AALSPEELLAAPEGESSAAVQQRVSAARDKALQRQGLPNHQLQGAQLDTHLQLEPEALTFAHKAAARLGWSARGTHRALK
VARTIADLADSDSITQTHLAEALQYRRALMQP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=492619 INP81_RS01050 WP_197577540.1 242614..244152(+) (comM) [Comamonas thiooxydans strain ZDHYF418]
ATGGGTCTGGCACTGGTTCAAAGTCGTGCCCTGCTGGGCTTGCAGGCACCGGCTGTCACGGTGGAGGTCCATTTGGCCAA
CGGACTGCCTTCGTTCACTCTGGTGGGCCTGGCGGATGTGGAGGTCAAGGAGGCCCGCGAGCGCGTGCGCGCGGCCATCG
TCAATGCGGGGCTGGAGTTCCCGAACAACAAGCGCATCACGGTCAACCTGGCTCCGGCAGATCTGCCCAAGGACTCAGGC
CGCTTTGACCTGCCGATAGCGCTGGGCATTCTGGCGGCCAGCGGGCAGATCGATGCACAGCGGCTCGCCGATTATGAGTT
TGCAGGAGAGCTGTCGCTGACCGGTGCCCTGCGCCCGGTACGCGGCGCCCTGGCTACTGCGCTGGCCCTGCAGCGTCAGC
AACAGCGCGTGCGGCTGGTGCTGCCGCCAGACAGTGCGCTGGAGGCCGCCTTTGTGCCGGCCATCGAAGTCTTCGGCGCC
GCGCATCTGCTGGATGTGGTCAGGCAGTTCATCGCGCATGACGCCACCCTGGCGGAGCAGGGCGATGGCGTGGAGGGCTG
GCAGCGGGTGCACTCCAGACCTGCTGAAGCCTCTTTGCCGTCGCTGGATCTGCGCGAGGTGCGCGGCCAGATGCAGGCCA
AGCGCGCGCTTGAAATTGCAGCTGCCGGCGCGCATGGTGTGCTGATGATCGGCCCTCCGGGCTCGGGGAAATCCATGCTG
GCCCAGCGCTTTGCGGGCTTGCTGCCCGGCATGACCGATGAGGAAGCGCTCGAAGCCGCCGCCATTGCCAGCCTCAGCGG
TCGTTTCACGCCGCAGCTGTGGCGTCAGCGGCCGTTTGCCGCTCCCCATCACACGGCCAGTTCCATCGCCTTGGTCGGCG
GCGGCTCTCCGCCCCGGCCCGGCGAAATCTCCTATGCCCATTGCGGTGCGCTTTTCCTGGATGAGCTGCCCGAGTTCGCG
CGCAGCGCCCTGGAGGCCCTGCGCGAGCCGCTGGAGACCGGGCGCATCACCATCGTGCGGGCCGTGCAGAGGGCGGAGTT
TCCGGCCCGTTTCCAGCTGGTGGCAGCCATGAACCCCTGCCCCTGCGGCTTCTGGGGATCGCGCATCAGGGCCTGCCGCT
GCTCGCCCGATCAGGTGGCACGTTATCAGGCACGCATCAGCGGTCCCTTGCTGGACCGTATCGATCTGCATGTGGAGGTG
GCGGCACTGTCGCCCGAGGAGTTGCTGGCAGCGCCCGAAGGGGAGAGCAGCGCTGCCGTGCAGCAACGCGTGAGCGCGGC
CAGGGACAAGGCCTTGCAGCGCCAGGGCCTGCCCAATCATCAGTTGCAGGGGGCACAGCTCGACACGCATCTGCAACTGG
AGCCCGAGGCGCTGACCTTTGCCCACAAGGCTGCAGCGCGCCTTGGCTGGTCGGCGCGCGGCACGCACCGGGCCTTGAAG
GTGGCGCGAACCATTGCCGATCTGGCGGACTCGGATTCCATCACGCAAACCCATCTGGCCGAGGCATTGCAGTACCGCCG
AGCGCTGATGCAGCCGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.642

99.805

0.525
  comM Vibrio campbellii strain DS40M4

51.373

99.609

0.512
  comM Haemophilus influenzae Rd KW20

51.181

99.219

0.508
  comM Glaesserella parasuis strain SC1401

49.02

99.609

0.488
  comM Legionella pneumophila str. Paris

47.5

100

0.482
  comM Legionella pneumophila strain ERS1305867

47.5

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.922

99.609

0.438