Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IL982_RS12930 Genome accession   NZ_CP063049
Coordinates   2759129..2760661 (-) Length   510 a.a.
NCBI ID   WP_065171004.1    Uniprot ID   A0A1X9U4U6
Organism   Photobacterium damselae subsp. damselae strain KC-Dl-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2754129..2765661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL982_RS12905 (IL982_12905) - 2755174..2755347 (+) 174 WP_005302173.1 hypothetical protein -
  IL982_RS12910 (IL982_12910) - 2755523..2755789 (+) 267 WP_005302176.1 YihD family protein -
  IL982_RS12915 (IL982_12915) ccoG 2755978..2757315 (+) 1338 WP_197573518.1 cytochrome c oxidase accessory protein CcoG -
  IL982_RS12920 (IL982_12920) - 2757358..2758347 (+) 990 WP_197573519.1 serine/threonine protein kinase -
  IL982_RS12925 (IL982_12925) - 2758437..2759036 (+) 600 WP_414477583.1 thiol:disulfide interchange protein DsbA/DsbL -
  IL982_RS12930 (IL982_12930) comM 2759129..2760661 (-) 1533 WP_065171004.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IL982_RS12935 (IL982_12935) ilvG 2761201..2762847 (+) 1647 WP_197573521.1 acetolactate synthase 2 catalytic subunit -
  IL982_RS12940 (IL982_12940) ilvM 2762850..2763107 (+) 258 WP_036764608.1 acetolactate synthase 2 small subunit -
  IL982_RS12945 (IL982_12945) - 2763147..2764076 (+) 930 WP_065171002.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55121.40 Da        Isoelectric Point: 8.2787

>NTDB_id=492570 IL982_RS12930 WP_065171004.1 2759129..2760661(-) (comM) [Photobacterium damselae subsp. damselae strain KC-Dl-1]
MSLAIVHSRACVGVQAPAVTVEVHLSNGMPSFTLVGLPETTVKEAKDRVRSAIFNANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPAESLHKYEFLGELALSGQLRPVKGALPAALAALKAKRCLIVPDRNGDQVALVGEKQHKSAPDL
IQVCAHLLGQQSLSLRFQTKPDDDSLDLTQGRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPP
MSHDEALETAAVASLTQQSIHQGNWLQRPLRAPHHSSSMAALVGGGSIPRPGEISLAHNGILFLDEMPEFERKVLDSLRE
PLESGEIVISRATSKATFPANFQLIGALNPSPTGFYEGAQTRTNPQVILRYLSKLSGPLLDRFDMSIEIPALPKGTLAQG
GERGESTPVIKARVNQARTLMDQRAGKVNARLSTRELDKHCALAREDAEFLENALHQLGLSIRAYHRIIKVARTIADLSN
CEQIERAHLAEALGYRAMDRLLKQLTAQAI

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=492570 IL982_RS12930 WP_065171004.1 2759129..2760661(-) (comM) [Photobacterium damselae subsp. damselae strain KC-Dl-1]
ATGTCATTGGCCATTGTGCATAGCCGGGCTTGCGTTGGGGTACAAGCTCCAGCAGTAACTGTTGAAGTTCATTTAAGTAA
TGGAATGCCCAGTTTTACTCTGGTGGGTTTACCTGAGACAACGGTAAAAGAGGCCAAAGATCGGGTTCGAAGTGCCATTT
TTAATGCCAATTTTGAGTTTCCCTCTCGGCGAATTACCGTCAATTTAGCTCCCGCTGATTTGCCTAAAGAAGGGGGCCGA
TTTGACTTACCCATCGCGCTTGGAATTTTAGCTGCTTCAGGACAAATACCCGCAGAATCACTGCATAAATACGAATTTTT
AGGGGAGTTGGCTTTATCAGGGCAATTGCGTCCGGTAAAGGGGGCACTGCCTGCTGCTCTTGCTGCATTAAAGGCTAAAA
GGTGTTTGATTGTCCCTGATCGTAATGGCGATCAAGTGGCATTAGTAGGTGAAAAACAACATAAGTCAGCGCCTGATTTG
ATCCAAGTTTGCGCTCACCTATTAGGACAGCAAAGTTTATCTTTACGCTTTCAAACAAAACCCGATGATGATTCGTTAGA
TCTGACTCAGGGGCGAGATATGCAAGATATTATTGGTCAGCAGCAAGGTAAGCGAGCATTGGAAATTGCAGCTGCCGGTG
GCCATAACCTTCTGTTTCTTGGCCCTCCTGGAACGGGAAAAACCATGTTAGCCTCTCGGTTATGTGATTTATTACCTCCC
ATGAGCCATGATGAGGCGTTAGAAACCGCAGCTGTTGCCTCGCTGACTCAGCAGAGCATTCATCAAGGCAATTGGCTACA
ACGACCTCTACGTGCACCTCATCATTCAAGCTCTATGGCTGCCTTAGTTGGTGGTGGTTCAATTCCAAGGCCGGGGGAGA
TCTCTTTGGCGCATAACGGCATTCTTTTTTTAGATGAAATGCCCGAATTTGAGCGTAAGGTTTTGGACTCATTACGTGAA
CCTTTAGAGTCGGGAGAGATTGTGATTTCTCGGGCAACCAGTAAAGCAACCTTTCCGGCAAATTTTCAATTGATTGGAGC
GCTAAATCCGAGTCCAACAGGGTTTTATGAAGGCGCACAAACTCGAACTAATCCTCAAGTTATTTTGCGCTATCTCAGTA
AGCTCTCCGGCCCGCTGCTTGATAGGTTTGATATGTCGATTGAGATCCCAGCTCTACCGAAAGGTACTTTAGCTCAAGGT
GGTGAGCGCGGTGAGAGTACTCCAGTGATTAAAGCGCGAGTTAATCAGGCGCGAACCTTAATGGATCAGCGAGCAGGAAA
AGTGAATGCTCGACTTTCTACTCGGGAGTTAGATAAACATTGCGCTCTGGCTCGAGAAGATGCGGAGTTTCTTGAAAATG
CATTGCATCAGTTGGGGTTATCGATTCGTGCGTACCACCGCATTATTAAGGTGGCACGAACCATTGCCGATTTAAGTAAT
TGTGAGCAGATAGAGCGAGCGCATTTAGCTGAAGCGTTAGGATATCGAGCGATGGATCGGTTATTGAAGCAGTTAACGGC
TCAAGCGATATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X9U4U6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

76.863

100

0.769
  comM Vibrio cholerae strain A1552

76.471

100

0.765
  comM Glaesserella parasuis strain SC1401

63.333

100

0.633
  comM Haemophilus influenzae Rd KW20

62.722

99.412

0.624
  comM Legionella pneumophila str. Paris

49.699

97.843

0.486
  comM Legionella pneumophila strain ERS1305867

49.699

97.843

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

99.216

0.427