Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H4O27_RS03885 Genome accession   NZ_CP062976
Coordinates   779898..780185 (+) Length   95 a.a.
NCBI ID   WP_165008812.1    Uniprot ID   -
Organism   Neisseria yangbaofengii strain ZJ785     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 780628..780825 779898..780185 flank 443


Gene organization within MGE regions


Location: 779898..780825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4O27_RS03885 comE 779898..780185 (+) 288 WP_165008812.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9877.65 Da        Isoelectric Point: 10.5777

>NTDB_id=492174 H4O27_RS03885 WP_165008812.1 779898..780185(+) (comE) [Neisseria yangbaofengii strain ZJ785]
MKKIIFCALTTLVASVSAAAVNINTASESELTALPGVGPAKAKAIVEYRKQHGSFKTLDELKNVKGIGEGIFAKLKNEAS
VAAPAKKAAQPVVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=492174 H4O27_RS03885 WP_165008812.1 779898..780185(+) (comE) [Neisseria yangbaofengii strain ZJ785]
ATGAAAAAAATCATCTTCTGCGCACTGACCACTTTGGTCGCTTCCGTCTCTGCAGCAGCAGTCAACATCAACACCGCTTC
CGAAAGCGAACTGACGGCACTGCCGGGTGTAGGCCCGGCCAAAGCCAAAGCCATTGTGGAATACCGCAAACAGCATGGCA
GCTTTAAGACTTTGGACGAACTGAAAAACGTCAAAGGCATTGGGGAAGGGATTTTTGCGAAATTGAAGAATGAAGCGTCG
GTTGCCGCCCCTGCCAAGAAGGCTGCCCAGCCTGTGGTTAAAAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(17-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

59.375

100

0.6
  comE Neisseria gonorrhoeae MS11

59.375

100

0.6
  comE Neisseria gonorrhoeae MS11

59.375

100

0.6
  comE Neisseria gonorrhoeae MS11

59.375

100

0.6
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.602

87.368

0.442
  comEA Staphylococcus aureus N315

59.016

64.211

0.379
  comEA Staphylococcus aureus MW2

59.016

64.211

0.379