Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H4O27_RS00370 Genome accession   NZ_CP062976
Coordinates   72990..73277 (+) Length   95 a.a.
NCBI ID   WP_165008812.1    Uniprot ID   -
Organism   Neisseria yangbaofengii strain ZJ785     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 67990..78277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4O27_RS00370 comE 72990..73277 (+) 288 WP_165008812.1 helix-hairpin-helix domain-containing protein Machinery gene
  H4O27_RS00375 - 73546..74378 (-) 833 Protein_68 transposase -
  H4O27_RS00380 - 74695..75210 (-) 516 WP_165010496.1 hypothetical protein -
  H4O27_RS00385 pyk 75508..76980 (+) 1473 WP_165010498.1 pyruvate kinase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9877.65 Da        Isoelectric Point: 10.5777

>NTDB_id=492163 H4O27_RS00370 WP_165008812.1 72990..73277(+) (comE) [Neisseria yangbaofengii strain ZJ785]
MKKIIFCALTTLVASVSAAAVNINTASESELTALPGVGPAKAKAIVEYRKQHGSFKTLDELKNVKGIGEGIFAKLKNEAS
VAAPAKKAAQPVVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=492163 H4O27_RS00370 WP_165008812.1 72990..73277(+) (comE) [Neisseria yangbaofengii strain ZJ785]
ATGAAAAAAATCATCTTCTGCGCACTGACCACTTTGGTCGCTTCCGTCTCTGCAGCAGCAGTCAACATCAACACCGCTTC
CGAAAGCGAACTGACGGCACTGCCGGGTGTAGGCCCGGCCAAAGCCAAAGCCATTGTGGAATACCGCAAACAGCATGGCA
GCTTTAAGACTTTGGACGAACTGAAAAACGTCAAAGGCATTGGGGAAGGGATTTTTGCGAAATTGAAGAATGAAGCGTCG
GTTGCCGCCCCTGCCAAGAAGGCTGCCCAGCCTGTGGTTAAAAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(17-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

59.375

100

0.6
  comE Neisseria gonorrhoeae MS11

59.375

100

0.6
  comE Neisseria gonorrhoeae MS11

59.375

100

0.6
  comE Neisseria gonorrhoeae MS11

59.375

100

0.6
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.602

87.368

0.442
  comEA Staphylococcus aureus N315

59.016

64.211

0.379
  comEA Staphylococcus aureus MW2

59.016

64.211

0.379