Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BS3272_RS09725 Genome accession   NZ_CP062939
Coordinates   2308049..2309932 (-) Length   627 a.a.
NCBI ID   WP_024463113.1    Uniprot ID   A0A087E7P5
Organism   Bifidobacterium subtile strain KCTC 3272     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2303049..2314932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS3272_RS09710 (BS3272_09710) - 2303115..2304416 (+) 1302 WP_024463116.1 ATP-binding protein -
  BS3272_RS09715 (BS3272_09715) - 2304526..2305332 (-) 807 WP_024463115.1 alpha/beta fold hydrolase -
  BS3272_RS09720 (BS3272_09720) rcrQ 2306090..2307937 (-) 1848 WP_024463114.1 ABC transporter ATP-binding protein Regulator
  BS3272_RS09725 (BS3272_09725) rcrP 2308049..2309932 (-) 1884 WP_024463113.1 ABC transporter ATP-binding protein Regulator
  BS3272_RS09730 (BS3272_09730) - 2310232..2310720 (-) 489 WP_033502624.1 MarR family winged helix-turn-helix transcriptional regulator -
  BS3272_RS09735 (BS3272_09735) - 2311344..2313071 (-) 1728 WP_024463112.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 627 a.a.        Molecular weight: 68447.71 Da        Isoelectric Point: 4.7944

>NTDB_id=492020 BS3272_RS09725 WP_024463113.1 2308049..2309932(-) (rcrP) [Bifidobacterium subtile strain KCTC 3272]
MLSICKYLSKSEIGQLLIGLIFIVSQIWFDLKLPDYMSDITRLVETPGSNMHDIWIAGGKMLLISLGSVLCAIATGYVAA
RVGASFSQRLRSLEFRKVESFGPAEMNRFSTASLITRSTNDITQIQMFVTMGLLLLVKSPIMAVWAVCKIAGKGVDWTVA
TAVAVAVLLVVIGVLMAMVVPKFRSMQRLTDNINLVARENLTGLRVVRAYNAEDYQETKYDKANAELSNTYLFTNRAMSV
MMPLINAVMNGLMLAIYWIGAYLIDAAGIQDKLTLFSNMVVFSSYSVQVIMSFLLMSMVFVLLPRADVSANRVMEVLDTD
PMVTDSAEDAAGDAGVNTAATVAAASKGTVEFKNVSFAYPDSREAMLEGITFSAQPGQTVAFIGSTGSGKSSLVNLVPRF
YDATEGQVLVDGVDVRNYTLKALRDKIGYVPQQSVLFKGTVASNIRYGDRPQDSADVELVDTSSIQGRRREAELMKHADD
VQDLGDEQQVRKAAEVAQADEFIETMDGAYDAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVR
DELAKEAKDSTKLIVAQRIGTIMDADRIVVLDDGKVVGQGTHRELLENCSVYREIAESQLSPDELAA

Nucleotide


Download         Length: 1884 bp        

>NTDB_id=492020 BS3272_RS09725 WP_024463113.1 2308049..2309932(-) (rcrP) [Bifidobacterium subtile strain KCTC 3272]
ATGCTGAGCATCTGCAAATATCTCTCCAAATCGGAGATCGGGCAGCTGCTGATCGGGCTCATATTCATCGTGAGCCAGAT
CTGGTTTGATCTCAAGCTTCCGGACTACATGTCCGATATCACGCGGCTCGTGGAAACCCCGGGCAGCAACATGCACGACA
TCTGGATCGCCGGCGGCAAGATGCTGCTCATCTCGCTGGGCTCCGTGCTATGCGCGATCGCGACCGGCTACGTCGCGGCG
CGGGTTGGCGCCTCGTTCAGCCAGCGCCTGCGCTCGCTCGAATTCCGCAAGGTCGAGTCCTTTGGCCCGGCAGAGATGAA
CCGCTTCTCCACAGCGAGCCTCATCACCCGCTCGACCAACGACATCACGCAGATTCAGATGTTCGTCACGATGGGCCTGC
TGCTGCTCGTCAAGTCGCCGATCATGGCCGTATGGGCCGTATGCAAGATCGCGGGCAAGGGCGTGGACTGGACGGTGGCA
ACCGCCGTCGCCGTCGCCGTACTGCTCGTGGTCATCGGCGTGCTCATGGCCATGGTCGTGCCCAAGTTCCGCAGCATGCA
GCGCCTGACCGACAACATCAACCTCGTCGCCCGCGAGAACCTCACCGGCCTGCGCGTCGTGCGCGCCTACAACGCGGAAG
ACTATCAGGAGACGAAATACGACAAGGCCAATGCGGAGCTGAGCAACACCTACCTATTCACCAACCGCGCCATGTCGGTC
ATGATGCCGCTGATCAACGCCGTCATGAACGGCCTGATGCTGGCGATCTACTGGATCGGCGCGTATCTCATCGACGCGGC
CGGCATTCAGGACAAGCTCACGCTGTTCTCGAATATGGTCGTCTTCTCCAGCTACTCGGTGCAGGTCATCATGAGCTTCC
TGCTGATGAGCATGGTGTTCGTGCTGCTGCCGCGCGCCGACGTGTCCGCAAACCGCGTGATGGAAGTGCTTGATACCGAT
CCGATGGTGACCGATAGCGCTGAGGACGCTGCCGGTGACGCCGGTGTAAACACTGCCGCAACCGTCGCCGCCGCTTCCAA
GGGCACGGTCGAGTTCAAGAATGTGAGCTTCGCCTACCCGGACTCGCGCGAAGCGATGCTCGAAGGCATCACGTTCAGCG
CCCAGCCCGGCCAGACGGTCGCTTTCATTGGCTCGACCGGCTCGGGCAAGTCCTCGCTGGTCAACCTCGTGCCGCGCTTC
TACGACGCGACCGAAGGCCAGGTGCTGGTCGACGGCGTGGACGTGCGCAACTACACGCTCAAGGCTCTTCGCGACAAAAT
CGGCTACGTGCCGCAGCAGTCGGTACTCTTCAAGGGCACGGTCGCCTCGAATATCCGCTACGGCGACCGACCGCAGGATT
CCGCCGACGTCGAACTGGTCGACACGTCCAGCATTCAGGGGCGCAGGCGCGAAGCCGAGCTGATGAAGCATGCGGATGAC
GTGCAGGATCTCGGCGACGAGCAGCAGGTTCGCAAGGCCGCTGAGGTCGCGCAGGCCGATGAGTTCATCGAGACCATGGA
CGGCGCCTATGACGCCGCGATCGCGCAGGGCGGCTCGAACGTCTCGGGCGGCCAGAAGCAGCGGCTTTCCATCGCCCGCG
CGGTGTATCGTCACCCTGAAATCCTGATCTTCGATGATTCCTTCAGCGCCTTGGACTTCAAGACCGATCGCGCCGTGCGC
GACGAGCTGGCCAAAGAAGCCAAGGATTCCACGAAGCTGATTGTCGCCCAGCGCATCGGCACCATCATGGACGCCGACCG
CATCGTCGTGCTCGACGACGGCAAGGTGGTCGGGCAGGGCACCCACCGCGAGCTGCTGGAAAATTGCAGCGTGTACCGCG
AAATCGCCGAGTCCCAGCTTAGCCCGGACGAGCTGGCCGCGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(367-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087E7P5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.98

100

0.498