Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KFQ11_RS02285 Genome accession   NZ_CP074354
Coordinates   449543..450667 (+) Length   374 a.a.
NCBI ID   WP_057108309.1    Uniprot ID   -
Organism   Escherichia coli strain XJ5.2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 444543..455667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFQ11_RS02260 (KFQ11_02200) mscL 444669..445079 (-) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -
  KFQ11_RS02265 (KFQ11_02205) trkA 445209..446585 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  KFQ11_RS02270 (KFQ11_02210) rsmB 446607..447896 (-) 1290 WP_282318336.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  KFQ11_RS02275 (KFQ11_02215) fmt 447942..448889 (-) 948 WP_000004453.1 methionyl-tRNA formyltransferase -
  KFQ11_RS02280 (KFQ11_02220) def 448904..449413 (-) 510 WP_000114984.1 peptide deformylase -
  KFQ11_RS02285 (KFQ11_02225) dprA 449543..450667 (+) 1125 WP_057108309.1 DNA-protecting protein DprA Machinery gene
  KFQ11_RS02290 (KFQ11_02230) smg 450639..451112 (+) 474 WP_000460672.1 DUF494 family protein Smg -
  KFQ11_RS02295 (KFQ11_02235) yrdD 451141..451683 (+) 543 WP_001129723.1 type I DNA topoisomerase -
  KFQ11_RS02300 (KFQ11_02240) tsaC 451688..452260 (+) 573 WP_001297709.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  KFQ11_RS02305 (KFQ11_02245) aroE 452265..453083 (+) 819 WP_000451235.1 shikimate dehydrogenase -
  KFQ11_RS02310 (KFQ11_02250) yrdB 453080..453337 (+) 258 WP_001070567.1 DUF1488 domain-containing protein -
  KFQ11_RS02315 (KFQ11_02255) yrdA 453313..453867 (-) 555 WP_001286216.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 41013.00 Da        Isoelectric Point: 6.3125

>NTDB_id=490750 KFQ11_RS02285 WP_057108309.1 449543..450667(+) (dprA) [Escherichia coli strain XJ5.2]
MVDTEIWLRLMSISSLYGDEMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLATSLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=490750 KFQ11_RS02285 WP_057108309.1 449543..450667(+) (dprA) [Escherichia coli strain XJ5.2]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTACGGCGATGAAATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACTGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATTCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTAGGGAATGGACTTAATACCATTCATCCGCGTCGTCATGCCCGACTGGCTACCAGTTTGCT
TGAACAGGGTGGCGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGTTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCAGGACCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGCAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (WHD_DprA)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

47.967

98.663

0.473
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

49.355

82.888

0.409
  dprA Vibrio cholerae strain A1552

49.355

82.888

0.409
  dprA Haemophilus influenzae Rd KW20

45.104

90.107

0.406
  dprA Glaesserella parasuis strain SC1401

44.807

90.107

0.404
  dprA Legionella pneumophila strain ERS1305867

44.242

88.235

0.39