Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   IL331_RS13540 Genome accession   NZ_CP062698
Coordinates   2856960..2857325 (+) Length   121 a.a.
NCBI ID   WP_218079912.1    Uniprot ID   -
Organism   Anthocerotibacter panamensis C109     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2851960..2862325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL331_RS13520 - 2852751..2853077 (-) 327 WP_218079908.1 DUF5132 domain-containing protein -
  IL331_RS13525 - 2853473..2853943 (-) 471 WP_218079909.1 hypothetical protein -
  IL331_RS13530 glnA 2854169..2855590 (+) 1422 WP_218079910.1 type I glutamate--ammonia ligase -
  IL331_RS13535 - 2855802..2856941 (+) 1140 WP_218079911.1 response regulator -
  IL331_RS13540 pilH 2856960..2857325 (+) 366 WP_218079912.1 PleD family two-component system response regulator Machinery gene
  IL331_RS13545 - 2857335..2857838 (+) 504 WP_218079913.1 chemotaxis protein CheW -
  IL331_RS20530 - 2857861..2858067 (+) 207 Protein_2687 tetratricopeptide repeat protein -
  IL331_RS20535 - 2858596..2859621 (+) 1026 Protein_2688 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13773.12 Da        Isoelectric Point: 6.3383

>NTDB_id=490545 IL331_RS13540 WP_218079912.1 2856960..2857325(+) (pilH) [Anthocerotibacter panamensis C109]
MSKVLVVEDNLSQREMISSLLRESGIEVMAAQDGVEALDQIQRLRPDLVILDIIMPRMNGYEVCRRIKSNPATQKVPVIM
CTSKAEEFDRYWGIKQGADAYISKPFVPQEFVGMVRQLLKT

Nucleotide


Download         Length: 366 bp        

>NTDB_id=490545 IL331_RS13540 WP_218079912.1 2856960..2857325(+) (pilH) [Anthocerotibacter panamensis C109]
ATGAGTAAAGTCTTAGTAGTAGAAGATAACTTGAGCCAGCGTGAGATGATCTCCTCGTTGTTGCGCGAGAGTGGTATCGA
AGTCATGGCAGCCCAAGATGGCGTAGAAGCGCTCGATCAGATTCAGCGCCTGCGCCCTGACTTGGTGATCCTCGATATCA
TCATGCCCCGTATGAATGGCTACGAGGTCTGCCGCCGCATCAAATCCAACCCTGCAACCCAAAAGGTTCCGGTGATCATG
TGCACCTCCAAAGCCGAGGAATTTGACCGCTATTGGGGAATCAAGCAGGGGGCTGACGCCTATATCTCCAAGCCATTTGT
GCCCCAGGAATTCGTCGGTATGGTCCGCCAACTATTAAAAACCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

66.116

100

0.661
  pilG Acinetobacter baumannii strain A118

40.336

98.347

0.397
  micA Streptococcus pneumoniae Cp1015

37.5

99.174

0.372
  vicR Streptococcus mutans UA159

36.667

99.174

0.364
  chiS Vibrio cholerae strain A1552

39.286

92.562

0.364