Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IHV80_RS01735 Genome accession   NZ_CP062500
Coordinates   360740..361300 (+) Length   186 a.a.
NCBI ID   WP_192889864.1    Uniprot ID   -
Organism   Vibrio bathopelagicus strain Sal10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 355740..366300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV80_RS01720 uvrA 355747..358578 (-) 2832 WP_192889862.1 excinuclease ABC subunit UvrA -
  IHV80_RS01725 galU 358784..359656 (-) 873 WP_004735975.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  IHV80_RS01730 qstR 359814..360461 (-) 648 WP_192889863.1 LuxR C-terminal-related transcriptional regulator Regulator
  IHV80_RS01735 ssb 360740..361300 (+) 561 WP_192889864.1 single-stranded DNA-binding protein Machinery gene
  IHV80_RS01740 - 361469..362812 (+) 1344 WP_192889865.1 site-specific integrase -
  IHV80_RS01745 - 362805..364079 (+) 1275 WP_226088502.1 site-specific integrase -
  IHV80_RS25140 - 364027..364395 (+) 369 WP_226088503.1 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20559.67 Da        Isoelectric Point: 5.2358

>NTDB_id=490491 IHV80_RS01735 WP_192889864.1 360740..361300(+) (ssb) [Vibrio bathopelagicus strain Sal10]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGGWGQPQQPQQQQQQYSAPAQQQQKA
PQQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=490491 IHV80_RS01735 WP_192889864.1 360740..361300(+) (ssb) [Vibrio bathopelagicus strain Sal10]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGTGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGTTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGATCAAAGCGGTCAAGACCGTTACACAACAGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGTGCTCCTGCTCAAGGTGGTATGGGGAACAACCAACAGC
AAGGTGGTTGGGGTCAGCCACAGCAGCCACAACAACAGCAGCAACAATACAGTGCTCCAGCTCAACAGCAGCAAAAAGCA
CCTCAACAACAAGCTCCACAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCCATTTTA
G

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.749

100

0.812
  ssb Glaesserella parasuis strain SC1401

57.447

100

0.581
  ssb Neisseria meningitidis MC58

45.946

99.462

0.457
  ssb Neisseria gonorrhoeae MS11

45.946

99.462

0.457