Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   IHV80_RS01730 Genome accession   NZ_CP062500
Coordinates   359814..360461 (-) Length   215 a.a.
NCBI ID   WP_192889863.1    Uniprot ID   -
Organism   Vibrio bathopelagicus strain Sal10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 354814..365461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV80_RS01720 uvrA 355747..358578 (-) 2832 WP_192889862.1 excinuclease ABC subunit UvrA -
  IHV80_RS01725 galU 358784..359656 (-) 873 WP_004735975.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  IHV80_RS01730 qstR 359814..360461 (-) 648 WP_192889863.1 LuxR C-terminal-related transcriptional regulator Regulator
  IHV80_RS01735 ssb 360740..361300 (+) 561 WP_192889864.1 single-stranded DNA-binding protein Machinery gene
  IHV80_RS01740 - 361469..362812 (+) 1344 WP_192889865.1 site-specific integrase -
  IHV80_RS01745 - 362805..364079 (+) 1275 WP_226088502.1 site-specific integrase -
  IHV80_RS25140 - 364027..364395 (+) 369 WP_226088503.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24912.96 Da        Isoelectric Point: 9.7022

>NTDB_id=490490 IHV80_RS01730 WP_192889863.1 359814..360461(-) (qstR) [Vibrio bathopelagicus strain Sal10]
MRKSRYARTLHFICVDPSNTYLHVKEIEKFLSLTLFKMTPDDLMLFDRKQSNRILLVDYKEVPQLTNLHPNLPVMWKNHE
IILFNVPNALPTSELITFGVLKGLFYNTEEKAKIAKGLEEVINGDNWLPRKVASQLLFYYRNIVSTNTTPTNVDLTIREL
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=490490 IHV80_RS01730 WP_192889863.1 359814..360461(-) (qstR) [Vibrio bathopelagicus strain Sal10]
ATGAGAAAATCTCGCTATGCTCGCACTTTGCATTTTATTTGCGTCGATCCGAGTAACACCTATTTGCATGTTAAAGAGAT
AGAAAAGTTTTTATCTCTAACCCTTTTCAAGATGACACCAGATGATCTGATGTTATTTGACCGAAAGCAGAGCAACAGAA
TTTTACTGGTTGATTACAAAGAGGTACCTCAATTAACGAACCTTCATCCAAATCTACCCGTGATGTGGAAAAATCATGAG
ATCATTCTATTCAACGTCCCTAATGCACTCCCTACATCGGAGTTGATTACGTTTGGCGTATTAAAAGGTCTGTTTTACAA
CACTGAAGAGAAGGCCAAAATAGCGAAGGGACTTGAAGAGGTGATCAATGGAGACAATTGGCTACCTAGAAAAGTGGCAA
GCCAATTGTTGTTCTACTATCGAAACATCGTGAGCACCAATACAACCCCCACCAATGTCGACCTAACCATTAGAGAGCTG
CAAGTCATTCGCTGCCTTCAATCAGGTTCATCAAACACCCAGATAGCCGATGACTTGTTTATTAGTGAATTCACCGTCAA
ATCTCATCTTTATCAAATATTCCGTAAGTTGGCCGTTAAAAATAGAGTCCAAGCCATTGCATGGGCAAACCAGAATCTGC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

54.419

100

0.544
  qstR Vibrio parahaemolyticus RIMD 2210633

53.488

100

0.535
  qstR Vibrio cholerae strain A1552

49.065

99.535

0.488