Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SGGB_RS11310 Genome accession   NC_017576
Coordinates   2286935..2288089 (-) Length   384 a.a.
NCBI ID   WP_009855165.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC 43143     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2281935..2293089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGB_RS11285 (SGGB_2218) - 2283057..2284646 (-) 1590 WP_013643545.1 membrane protein -
  SGGB_RS11290 (SGGB_2219) - 2284909..2285226 (-) 318 WP_006531413.1 DUF1292 domain-containing protein -
  SGGB_RS11295 (SGGB_2220) ruvX 2285259..2285678 (-) 420 WP_009855163.1 Holliday junction resolvase RuvX -
  SGGB_RS11300 (SGGB_2221) - 2285675..2285944 (-) 270 WP_003066890.1 IreB family regulatory phosphoprotein -
  SGGB_RS11305 (SGGB_2222) spx 2286267..2286665 (-) 399 WP_009855164.1 transcriptional regulator Spx -
  SGGB_RS11310 (SGGB_2223) recA 2286935..2288089 (-) 1155 WP_009855165.1 recombinase RecA Machinery gene
  SGGB_RS11315 (SGGB_2224) cinA 2288139..2289398 (-) 1260 WP_009855166.1 competence/damage-inducible protein A Machinery gene
  SGGB_RS11320 (SGGB_2225) - 2289530..2290720 (-) 1191 WP_009855167.1 MFS transporter -
  SGGB_RS12080 (SGGB_2226) - 2290880..2291053 (-) 174 WP_009855168.1 hypothetical protein -
  SGGB_RS11330 (SGGB_2227) - 2291103..2291567 (-) 465 WP_009855169.1 hypothetical protein -
  SGGB_RS11335 (SGGB_2228) - 2291637..2292044 (-) 408 WP_009855170.1 hypothetical protein -
  SGGB_RS11340 (SGGB_2229) - 2292207..2293061 (+) 855 WP_009855171.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41233.81 Da        Isoelectric Point: 4.8577

>NTDB_id=48940 SGGB_RS11310 WP_009855165.1 2286935..2288089(-) (recA) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MAKKTKKTEAITKKFGDERKKALDDALKLIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGSGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELVKIASDLDIIKKAGAWFSYNGEKIGQGSE
NAKKYLAEHPEVFDEIDHKVRVHYGLVEETEDEKAADVVEESAATNDNVDEVVLDLDDAIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=48940 SGGB_RS11310 WP_009855165.1 2286935..2288089(-) (recA) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
TTGGCTAAAAAGACAAAGAAAACAGAAGCTATCACTAAAAAATTTGGTGATGAGCGTAAAAAGGCACTTGATGATGCCTT
GAAATTAATTGAAAAAGATTTCGGTAAGGGAGCTGTTATGCGCCTTGGTGAACGTGCTGAACAAAAAGTTCAAGTCATGA
GTTCAGGTAGTTTGGCTCTTGATATTGCTTTGGGTGCAGGTGGTTACCCTAAAGGGCGCATCATTGAAATCTATGGACCT
GAAAGTTCTGGTAAGACAACTGTTGCGCTTCATGCAGTAGCACAAGCTCAAAAAGAAGGTGGAATTGCTGCCTTTATTGA
TGCCGAACACGCACTTGACCCAGCCTATGCTGCGGCTCTTGGTGTTAACATTGATGAACTTCTCTTGTCACAACCTGACT
CTGGGGAACAAGGTCTTGAAATTGCAGGAAAATTGATTGACTCAGGTGCTGTTGACCTCGTCGTTGTCGATTCTGTTGCT
GCCCTTGTACCTCGTGCTGAAATCGATGGTGACATTGGTGATAATCACGTTGGTTTGCAAGCTCGTATGATGAGTCAAGC
AATGCGTAAATTGTCAGCTTCAATCAACAAAACAAAAACAATTGCGATTTTCATCAACCAGTTGCGTGAAAAAGTTGGTG
TGATGTTTGGTAACCCAGAAACAACACCTGGTGGACGCGCGCTTAAGTTCTATGCGTCAGTTCGTCTTGATGTCCGTGGT
AACACACAAATCAAAGGTTCTGGTGACCAAAAAGATAGCAATATTGGTAAAGAAACTAAAATCAAAGTGGTTAAAAACAA
AGTTGCGCCACCATTTAAAACAGCTGAAGTTGAAATTATGTATGGTGAAGGAATTTCACGTACGGGTGAGCTTGTTAAGA
TTGCTAGCGACCTAGACATCATCAAAAAAGCAGGTGCTTGGTTCTCGTATAACGGTGAGAAAATCGGACAAGGTTCTGAA
AATGCGAAGAAATACTTGGCAGAACACCCAGAAGTCTTTGATGAAATCGACCACAAAGTACGTGTTCACTACGGTCTCGT
AGAAGAAACCGAAGATGAGAAAGCAGCAGATGTTGTTGAAGAATCAGCAGCAACTAATGATAATGTTGACGAAGTTGTTC
TTGATTTAGATGATGCTATCGAAATCGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

89.323

100

0.893
  recA Streptococcus mutans UA159

87.306

100

0.878
  recA Streptococcus mitis NCTC 12261

86.198

100

0.862
  recA Streptococcus mitis SK321

86.198

100

0.862
  recA Streptococcus pneumoniae D39

85.309

100

0.862
  recA Streptococcus pneumoniae Rx1

85.309

100

0.862
  recA Streptococcus pneumoniae R6

85.309

100

0.862
  recA Streptococcus pneumoniae TIGR4

85.309

100

0.862
  recA Lactococcus lactis subsp. cremoris KW2

79.143

91.146

0.721
  recA Latilactobacillus sakei subsp. sakei 23K

66.849

95.052

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

68.693

85.677

0.589
  recA Neisseria gonorrhoeae strain FA1090

60

91.146

0.547
  recA Neisseria gonorrhoeae MS11

60

91.146

0.547
  recA Neisseria gonorrhoeae MS11

60

91.146

0.547
  recA Acinetobacter baumannii D1279779

59.49

91.927

0.547
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.062

88.281

0.539
  recA Glaesserella parasuis strain SC1401

60.588

88.542

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.467

84.115

0.534
  recA Acinetobacter baylyi ADP1

60

88.542

0.531
  recA Pseudomonas stutzeri DSM 10701

57.349

90.365

0.518
  recA Vibrio cholerae strain A1552

61.231

84.635

0.518
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

84.635

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.215

86.198

0.51
  recA Helicobacter pylori 26695

58.084

86.979

0.505
  recA Helicobacter pylori strain NCTC11637

58.084

86.979

0.505
  recA Ralstonia pseudosolanacearum GMI1000

59.621

82.552

0.492

Multiple sequence alignment