Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SGGB_RS11240 Genome accession   NC_017576
Coordinates   2270055..2270768 (+) Length   237 a.a.
NCBI ID   WP_009855151.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC 43143     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2265055..2275768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGB_RS11230 (SGGB_2206) treC 2266239..2267870 (-) 1632 WP_012962620.1 alpha,alpha-phosphotrehalase -
  SGGB_RS11235 (SGGB_2207) treP 2267885..2269858 (-) 1974 WP_009855149.1 PTS system trehalose-specific EIIBC component -
  SGGB_RS11240 (SGGB_2208) treR 2270055..2270768 (+) 714 WP_009855151.1 trehalose operon repressor Regulator
  SGGB_RS11245 (SGGB_2209) - 2271069..2271896 (-) 828 WP_009855152.1 class C sortase -
  SGGB_RS11250 (SGGB_2210) - 2272084..2273526 (-) 1443 WP_009855153.1 isopeptide-forming domain-containing fimbrial protein -
  SGGB_RS11255 (SGGB_2211) - 2273633..2275609 (-) 1977 WP_009855154.1 Cna B-type domain-containing protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27418.41 Da        Isoelectric Point: 7.3315

>NTDB_id=48939 SGGB_RS11240 WP_009855151.1 2270055..2270768(+) (treR) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MKKYEQIFKELEHDITSGIYQAGDYLPTENELTQTYHMSRDTIRKALSLLAEAGLIQKIHGSGSQVIKHEQIDFPVSQLT
SYKELVDAHHINSKTNVIAIDKLIVDEKLAALTGFKKNNLVWRIIRQRVVDGTASVLDIDYLDKKIVPNMTREIAEQSIY
DYLENQLHLIIAYAQKEITIDQLTDRDKLLLDIGAEHHVVSVKSKVYLANKHQFQFTESRHKLEKFRFVDFATRKPQ

Nucleotide


Download         Length: 714 bp        

>NTDB_id=48939 SGGB_RS11240 WP_009855151.1 2270055..2270768(+) (treR) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGAAAAAATACGAACAAATCTTTAAAGAACTTGAACACGATATCACCTCTGGCATTTACCAAGCAGGTGACTATCTCCC
CACTGAAAACGAGCTAACCCAGACCTACCATATGAGCCGTGACACTATCCGCAAAGCGCTTAGTCTCCTTGCTGAAGCAG
GGCTTATCCAGAAAATTCACGGTTCTGGCTCTCAAGTCATCAAGCACGAACAGATTGATTTTCCCGTTTCACAGCTCACA
AGCTATAAAGAACTGGTCGACGCTCACCATATCAATTCCAAAACCAATGTCATTGCCATTGATAAACTTATCGTTGATGA
AAAATTAGCTGCGCTGACAGGTTTCAAGAAAAATAACCTTGTCTGGCGAATCATTCGCCAACGTGTCGTTGACGGCACCG
CTTCTGTCCTTGACATTGATTATTTAGACAAAAAAATCGTGCCAAATATGACACGAGAAATCGCCGAACAATCCATTTAC
GATTACCTTGAAAACCAACTCCACCTCATCATCGCTTACGCTCAAAAAGAAATCACCATTGACCAGCTAACTGACCGTGA
CAAACTACTCCTTGACATCGGCGCCGAACACCACGTTGTCTCTGTCAAATCAAAAGTTTACCTCGCCAACAAACACCAAT
TCCAATTCACCGAAAGCAGACACAAACTCGAGAAATTCCGCTTCGTTGACTTCGCAACCCGAAAACCACAGTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

72.222

98.734

0.713

Multiple sequence alignment