Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SGGB_RS10545 Genome accession   NC_017576
Coordinates   2126640..2128001 (-) Length   453 a.a.
NCBI ID   WP_012962567.1    Uniprot ID   A0AA36JZJ2
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC 43143     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2121640..2133001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGB_RS10520 (SGGB_2066) - 2122099..2122269 (-) 171 WP_231845019.1 potassium transporter Trk -
  SGGB_RS10525 (SGGB_2067) - 2122440..2123606 (-) 1167 WP_013643527.1 CynX/NimT family MFS transporter -
  SGGB_RS10530 (SGGB_2068) gltX 2123781..2125238 (-) 1458 WP_012962565.1 glutamate--tRNA ligase -
  SGGB_RS10535 (SGGB_2069) - 2125423..2125917 (-) 495 WP_012962566.1 LURP-one-related/scramblase family protein -
  SGGB_RS10540 (SGGB_2070) - 2126020..2126514 (-) 495 WP_003066696.1 beta-class carbonic anhydrase -
  SGGB_RS10545 (SGGB_2071) radA 2126640..2128001 (-) 1362 WP_012962567.1 DNA repair protein RadA Machinery gene
  SGGB_RS10550 (SGGB_2072) - 2128046..2128492 (-) 447 WP_012962568.1 dUTP diphosphatase -
  SGGB_RS10555 (SGGB_2073) - 2128615..2129814 (-) 1200 WP_012962569.1 MFS transporter -
  SGGB_RS10560 (SGGB_2074) - 2129830..2131032 (-) 1203 WP_012962570.1 hypothetical protein -
  SGGB_RS10565 (SGGB_2075) - 2131197..2131964 (-) 768 WP_009855078.1 epoxyqueuosine reductase QueH -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49498.76 Da        Isoelectric Point: 5.7771

>NTDB_id=48937 SGGB_RS10545 WP_012962567.1 2126640..2128001(-) (radA) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSIHYSRTKTGMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVINPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLSDIDIPDNIQVIGVTTVGEVLKQVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=48937 SGGB_RS10545 WP_012962567.1 2126640..2128001(-) (radA) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATCGCTAAGAAAAAAACAACATTTATTTGTCAGGAGTGTGGCTATCATTCTCCGAAATATTTGGGACGTTGTCCGAATTG
TTCGTCTTGGACGTCTTTTGTTGAAGAAGTTGAGGTGCAAGAAGTCAAAAATGCGCGTGTTAGTTTGACGGGTGAAAAGA
GTAAACCGACTAAGTTAAAGGATGTTAGCTCGATTCATTATTCACGCACGAAGACTGGCATGGATGAATTTAACCGCGTG
CTTGGTGGCGGTGTGGTGCCAGGTAGTTTGGTGCTTATCGGTGGTGACCCAGGTATCGGAAAATCAACGCTTCTTTTGCA
GGTATCTATTCAACTTGCAGATAAGGGAACGGTTCTTTACGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTACGTA
GTGAGCGTCTCGGCGACATTGACAATGAATTTTACCTTTATGCTGAAACGAATATGCAAGCCATTCGCGCACAGATTGAG
CAAATTCAGCCTGATTTCTTGATTATTGACTCGATTCAGACCATTATGAGCCCTGATATTTCTGGGGTTCAAGGGTCGGT
ATCACAAGTACGTGAAGTGACTGCAGAGTTGATGCAACTGGCTAAGACAAATAATATTGCAACCTTTATCGTTGGTCACG
TGACTAAGGAAGGGCAGCTTGCAGGACCGCGCATGCTTGAGCATATGGTGGATACGGTGCTTTATTTTGAAGGGGAACGT
CATCACACCTTCCGTATTTTACGTGCTGTGAAAAATCGTTTTGGTTCAACTAACGAAATCGGCATTTTTGAAATGCAATC
TGGTGGTCTTGTTGAAGTGATTAATCCGAGCCAAGTTTTCTTAGAAGAACGTTTGGACGGTGCAACGGGGTCAGCTATCG
TGGTTACCATGGAAGGTAGCCGTCCAATTTTGGCGGAAGTCCAAGCTTTGGTAACGCCGACAGTCTTTGGAAATGCTAAA
CGCACCACGACAGGACTGGATTTTAACCGTGTTAGCCTTATTATGGCGGTGCTTGAAAAACGTTGTGGACTTTTATTGCA
AAATCAAGATGCTTATTTGAAATCGGCTGGTGGTGTTAAACTTGATGAGCCAGCGATTGATTTGGCAGTAGCGGTAGCCA
TTGCGTCAAGCTATAAAGAAAAGCCAACAAATCCACAGGAAGCCTTCATCGGTGAAATTGGTTTGACAGGCGAAATTCGT
CGTGTGACACGTATTGAGCAACGTATCAACGAAGCAGCAAAACTTGGTTTTACCAAAGTTTATGCTCCTAAAAACTCACT
GTCAGATATTGATATTCCAGACAATATTCAAGTCATTGGTGTGACAACTGTGGGCGAAGTCCTCAAACAAGTTTTTGCGT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.079

100

0.881
  radA Streptococcus pneumoniae D39

88.079

100

0.881
  radA Streptococcus pneumoniae R6

88.079

100

0.881
  radA Streptococcus pneumoniae TIGR4

88.079

100

0.881
  radA Streptococcus mitis SK321

88.079

100

0.881
  radA Streptococcus mitis NCTC 12261

87.859

100

0.879
  radA Bacillus subtilis subsp. subtilis str. 168

61.589

100

0.616

Multiple sequence alignment