Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RSPO_RS14730 Genome accession   NC_017574
Coordinates   3188272..3189804 (+) Length   510 a.a.
NCBI ID   WP_014618079.1    Uniprot ID   F6G5J5
Organism   Ralstonia solanacearum Po82     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3183272..3194804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSPO_RS14705 (RSPO_c03061) - 3183695..3185242 (-) 1548 WP_014618075.1 ammonium transporter -
  RSPO_RS14710 (RSPO_c03062) - 3185275..3185613 (-) 339 WP_003262609.1 P-II family nitrogen regulator -
  RSPO_RS14715 (RSPO_c03063) - 3185661..3186473 (-) 813 WP_043912377.1 TorF family putative porin -
  RSPO_RS14720 (RSPO_c03064) - 3187023..3187283 (+) 261 WP_003262611.1 accessory factor UbiK family protein -
  RSPO_RS14725 (RSPO_c03065) - 3187539..3188054 (+) 516 WP_003262612.1 hypothetical protein -
  RSPO_RS14730 (RSPO_c03067) comM 3188272..3189804 (+) 1533 WP_014618079.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RSPO_RS14735 (RSPO_c03068) - 3189948..3191438 (+) 1491 WP_014618080.1 tyrosinase family protein -
  RSPO_RS14740 (RSPO_c03069) - 3191512..3191958 (+) 447 WP_230626248.1 signal peptidase -
  RSPO_RS14745 (RSPO_c03070) - 3192085..3192654 (-) 570 WP_042549830.1 hypothetical protein -
  RSPO_RS14750 (RSPO_c03071) - 3192746..3193261 (+) 516 WP_014618083.1 O-acetyl-ADP-ribose deacetylase -
  RSPO_RS14755 (RSPO_c03072) - 3193365..3193913 (+) 549 WP_003262623.1 TlpA disulfide reductase family protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54497.22 Da        Isoelectric Point: 7.2031

>NTDB_id=48881 RSPO_RS14730 WP_014618079.1 3188272..3189804(+) (comM) [Ralstonia solanacearum Po82]
MSLAVLRSRALAGIDAPAVSVEVHLANGLPSFTIVGLPDTEVKESKDRVRAAIQNSRFEFPTRRITVNLAPADLPKESGR
FDLPIALGILAASRQIPQTHLDTHEFAGELSLSGDLRPIRGALAMAYALSCHPGSPDGDAPLARAFVLPDENAAEAALVS
GTRVLPARTLIEVCDHLSAPDRKLAPAAPAPVGTGTRYPDLADVRGQPQARRALEVAAAGGHSMLMIGPPGTGKSMLAQR
FPGLLPDMDDDEALSAAAVMSLTTRGFDAQRWKVRPFRAPHHTASAVAMVGGGNTPRPGEISLAHQGVLFLDELPEFERR
VLEVLREPLETGHITISRAAHQTDFPASFQLIAAMNPCPCGYRGHPLRACRCTPDQVERYQARISGPLLDRIDVQIEVPT
PSQEELLDGPPGEPTAAVAARVAAAHARQLARQGKRNALLAGHEIDLHCPRTEAADGLLRQAMTRFSWSARAYARVLKLA
RTIADLAGDAAVDTAHIGEAIQYRRGVKAD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=48881 RSPO_RS14730 WP_014618079.1 3188272..3189804(+) (comM) [Ralstonia solanacearum Po82]
ATGAGCCTTGCCGTCCTGCGCTCGCGCGCGCTGGCCGGCATCGACGCGCCGGCTGTGTCGGTGGAAGTGCATCTGGCCAA
CGGACTGCCGTCCTTCACCATCGTCGGCCTGCCCGATACGGAGGTAAAGGAAAGCAAGGACCGCGTGCGCGCGGCCATCC
AGAACAGCCGCTTCGAGTTTCCCACGCGGCGCATCACCGTCAACCTGGCGCCAGCCGATCTGCCGAAGGAGTCGGGCCGC
TTCGACCTGCCGATCGCCCTTGGCATTCTCGCCGCCAGCCGGCAGATTCCGCAGACGCACCTGGACACGCACGAGTTTGC
CGGCGAGCTGTCCCTGTCGGGCGACCTGCGGCCGATCCGCGGCGCGCTGGCCATGGCGTACGCGTTGTCGTGCCATCCGG
GGTCGCCCGACGGCGATGCACCGCTCGCCCGCGCCTTTGTCCTGCCCGACGAGAATGCCGCCGAGGCGGCGCTGGTCAGC
GGCACCCGGGTACTGCCGGCACGCACGCTGATCGAGGTCTGCGACCATCTTTCCGCGCCCGACCGCAAGCTGGCACCGGC
AGCGCCCGCCCCGGTCGGCACCGGCACCCGCTATCCCGACCTGGCCGACGTACGCGGCCAGCCGCAGGCTCGCCGCGCAC
TGGAAGTGGCGGCAGCCGGCGGCCATTCGATGCTGATGATCGGCCCGCCCGGCACCGGCAAGTCGATGCTGGCCCAGCGC
TTCCCCGGCCTGCTTCCGGACATGGACGACGACGAAGCACTCTCCGCCGCGGCGGTGATGAGTCTGACCACGCGCGGCTT
CGATGCGCAGCGCTGGAAGGTGCGGCCATTCCGTGCGCCGCATCACACCGCGTCGGCAGTGGCGATGGTGGGGGGCGGCA
ACACGCCGCGGCCGGGGGAGATCTCACTGGCGCACCAGGGCGTGCTGTTCCTCGATGAGCTGCCCGAATTCGAACGCCGT
GTGCTGGAGGTCCTGCGGGAGCCGCTGGAGACCGGCCATATCACCATCTCCCGTGCGGCGCACCAGACGGACTTTCCCGC
CAGCTTCCAGCTGATCGCCGCCATGAATCCGTGCCCGTGCGGCTATCGCGGACATCCGTTGCGCGCGTGCCGGTGCACGC
CGGATCAGGTGGAACGCTATCAGGCCCGCATCTCCGGCCCGCTGCTCGATCGCATCGATGTGCAGATCGAGGTGCCGACG
CCATCGCAGGAGGAGTTGCTCGATGGCCCGCCCGGCGAACCGACCGCCGCCGTGGCCGCGCGCGTGGCGGCGGCGCATGC
GCGACAACTGGCACGCCAAGGCAAGCGCAACGCGTTGCTGGCCGGGCACGAAATCGACCTGCATTGCCCGCGCACCGAGG
CCGCCGACGGCCTGCTGCGCCAGGCGATGACACGTTTCTCGTGGTCGGCCCGCGCCTATGCGCGCGTGCTCAAGCTCGCC
CGCACCATCGCCGACCTGGCTGGCGACGCGGCCGTCGATACCGCACACATTGGCGAAGCCATCCAGTACCGGCGCGGCGT
GAAGGCGGACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-129)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F6G5J5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.557

99.216

0.531
  comM Vibrio campbellii strain DS40M4

52.277

99.02

0.518
  comM Glaesserella parasuis strain SC1401

50.881

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.98

100

0.51
  comM Legionella pneumophila str. Paris

50.98

100

0.51
  comM Haemophilus influenzae Rd KW20

49.225

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.442

100

0.429

Multiple sequence alignment