Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KFU68_RS02160 Genome accession   NZ_CP073946
Coordinates   452000..453124 (+) Length   374 a.a.
NCBI ID   WP_257201935.1    Uniprot ID   -
Organism   Escherichia coli strain MB51     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 447000..458124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU68_RS02135 (KFU68_02095) mscL 447126..447536 (-) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -
  KFU68_RS02140 (KFU68_02100) trkA 447666..449042 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  KFU68_RS02145 (KFU68_02105) rsmB 449064..450353 (-) 1290 WP_257201934.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  KFU68_RS02150 (KFU68_02110) fmt 450399..451346 (-) 948 WP_000004473.1 methionyl-tRNA formyltransferase -
  KFU68_RS02155 (KFU68_02115) def 451361..451870 (-) 510 WP_000114984.1 peptide deformylase -
  KFU68_RS02160 (KFU68_02120) dprA 452000..453124 (+) 1125 WP_257201935.1 DNA-protecting protein DprA Machinery gene
  KFU68_RS02165 (KFU68_02125) smg 453096..453569 (+) 474 WP_000460680.1 DUF494 family protein Smg -
  KFU68_RS02170 (KFU68_02130) yrdD 453598..454140 (+) 543 WP_001129722.1 type I DNA topoisomerase -
  KFU68_RS02175 (KFU68_02135) tsaC 454145..454717 (+) 573 WP_001301412.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  KFU68_RS02180 (KFU68_02140) aroE 454722..455540 (+) 819 WP_000451243.1 shikimate dehydrogenase -
  KFU68_RS02185 (KFU68_02145) yrdB 455537..455794 (+) 258 WP_001070563.1 DUF1488 domain-containing protein -
  KFU68_RS02190 (KFU68_02150) yrdA 455770..456324 (-) 555 WP_001286216.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40997.00 Da        Isoelectric Point: 6.3122

>NTDB_id=488575 KFU68_RS02160 WP_257201935.1 452000..453124(+) (dprA) [Escherichia coli strain MB51]
MVDTEIWLRLMSISSLYGDDMVRIAHWVAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARVIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLAASLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=488575 KFU68_RS02160 WP_257201935.1 452000..453124(+) (dprA) [Escherichia coli strain MB51]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGTATCAGCAGCTTGTACGGCGATGATATGGTCCGTATCGCTCACTG
GGTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCACGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATTCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGTAATCGATGGTGTAGCGCATAAAGCAGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGTCATGCCCGACTGGCTGCCAGTCTGCT
TGAACAGGGGGGCGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGTAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGAGAAGTTTTTGCCTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGCAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

47.967

98.663

0.473
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

49.032

82.888

0.406
  dprA Vibrio cholerae strain A1552

49.032

82.888

0.406
  dprA Haemophilus influenzae Rd KW20

44.807

90.107

0.404
  dprA Glaesserella parasuis strain SC1401

44.51

90.107

0.401
  dprA Legionella pneumophila strain ERS1305867

43.939

88.235

0.388