Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IF721_RS13460 | Genome accession | NZ_CP062362 |
| Coordinates | 2727188..2727658 (+) | Length | 156 a.a. |
| NCBI ID | WP_000610650.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain NAS_AN_152 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2703045..2733991 | 2727188..2727658 | within | 0 |
Gene organization within MGE regions
Location: 2703045..2733991
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF721_RS13310 (IF721_13245) | - | 2703045..2703671 (-) | 627 | WP_000522384.1 | nitroreductase family protein | - |
| IF721_RS13315 (IF721_13250) | - | 2703868..2705133 (+) | 1266 | WP_029163296.1 | SdrH family protein | - |
| IF721_RS13320 (IF721_13255) | mroQ | 2705158..2705901 (-) | 744 | WP_000197643.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| IF721_RS13325 (IF721_13260) | groES | 2706078..2706362 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| IF721_RS13330 (IF721_13265) | groL | 2706438..2708054 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| IF721_RS13335 (IF721_13270) | - | 2708588..2709895 (-) | 1308 | WP_001045085.1 | TrkH family potassium uptake protein | - |
| IF721_RS13340 (IF721_13275) | - | 2710056..2710967 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| IF721_RS13345 (IF721_13280) | - | 2711029..2711875 (+) | 847 | Protein_2591 | class I SAM-dependent methyltransferase | - |
| IF721_RS13350 (IF721_13285) | - | 2712247..2713470 (-) | 1224 | WP_000206621.1 | ArgE/DapE family deacylase | - |
| IF721_RS13355 (IF721_13290) | lukH | 2713906..2714958 (+) | 1053 | WP_000791419.1 | bi-component leukocidin LukGH subunit H | - |
| IF721_RS13360 (IF721_13295) | lukG | 2714980..2715996 (+) | 1017 | WP_000595326.1 | bi-component leukocidin LukGH subunit G | - |
| IF721_RS13365 (IF721_13300) | sph | 2716234..2717058 (-) | 825 | Protein_2595 | sphingomyelin phosphodiesterase | - |
| IF721_RS13370 (IF721_13305) | - | 2717115..2718152 (-) | 1038 | WP_000857191.1 | site-specific integrase | - |
| IF721_RS13375 (IF721_13310) | - | 2718211..2718675 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| IF721_RS13380 (IF721_13315) | - | 2718775..2718957 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| IF721_RS13385 (IF721_13320) | - | 2719161..2719502 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| IF721_RS13390 (IF721_13325) | - | 2719508..2720440 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| IF721_RS13395 (IF721_13330) | - | 2720456..2721169 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| IF721_RS13400 (IF721_13335) | - | 2721132..2721305 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| IF721_RS13405 (IF721_13340) | - | 2721302..2721565 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| IF721_RS13410 (IF721_13345) | - | 2721581..2721778 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| IF721_RS13415 (IF721_13350) | - | 2721765..2722145 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| IF721_RS13420 (IF721_13355) | - | 2722200..2722523 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| IF721_RS13425 (IF721_13360) | - | 2722520..2722681 (+) | 162 | WP_000048132.1 | DUF1270 family protein | - |
| IF721_RS13430 (IF721_13365) | - | 2722776..2723078 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| IF721_RS13435 (IF721_13370) | - | 2723083..2723343 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| IF721_RS13440 (IF721_13375) | - | 2723352..2723615 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| IF721_RS13445 (IF721_13380) | - | 2723624..2725567 (+) | 1944 | WP_168777961.1 | AAA family ATPase | - |
| IF721_RS13450 (IF721_13385) | - | 2725569..2726489 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| IF721_RS13455 (IF721_13390) | - | 2726570..2727187 (+) | 618 | WP_073394849.1 | MBL fold metallo-hydrolase | - |
| IF721_RS13460 (IF721_13395) | ssbA | 2727188..2727658 (+) | 471 | WP_000610650.1 | single-stranded DNA-binding protein | Machinery gene |
| IF721_RS13465 (IF721_13400) | - | 2727688..2728581 (+) | 894 | WP_168777962.1 | DnaD domain-containing protein | - |
| IF721_RS13470 (IF721_13405) | - | 2728588..2728806 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| IF721_RS13475 (IF721_13410) | - | 2728815..2729219 (+) | 405 | WP_168777963.1 | RusA family crossover junction endodeoxyribonuclease | - |
| IF721_RS13480 (IF721_13415) | - | 2729232..2729600 (+) | 369 | WP_000101274.1 | SA1788 family PVL leukocidin-associated protein | - |
| IF721_RS13485 (IF721_13420) | - | 2729604..2729846 (+) | 243 | WP_000131366.1 | SAV1978 family virulence-associated passenger protein | - |
| IF721_RS13490 (IF721_13425) | - | 2729911..2730360 (+) | 450 | WP_000982711.1 | YopX family protein | - |
| IF721_RS13495 (IF721_13430) | - | 2730357..2730866 (+) | 510 | WP_001105599.1 | hypothetical protein | - |
| IF721_RS13500 (IF721_13435) | - | 2730863..2731273 (+) | 411 | WP_000197967.1 | hypothetical protein | - |
| IF721_RS13505 (IF721_13440) | - | 2731266..2731802 (+) | 537 | WP_168777964.1 | dUTPase | - |
| IF721_RS13510 (IF721_13445) | - | 2731839..2732084 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| IF721_RS13515 (IF721_13450) | - | 2732081..2732287 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| IF721_RS13520 (IF721_13455) | - | 2732284..2732670 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| IF721_RS13525 (IF721_13460) | - | 2732667..2732816 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| IF721_RS13530 (IF721_13465) | - | 2732816..2733016 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| IF721_RS13535 (IF721_13470) | - | 2733044..2733460 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| IF721_RS13540 (IF721_13475) | - | 2733692..2733991 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17658.50 Da Isoelectric Point: 4.9628
>NTDB_id=488512 IF721_RS13460 WP_000610650.1 2727188..2727658(+) (ssbA) [Staphylococcus aureus strain NAS_AN_152]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=488512 IF721_RS13460 WP_000610650.1 2727188..2727658(+) (ssbA) [Staphylococcus aureus strain NAS_AN_152]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |