Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KFU83_RS02285 Genome accession   NZ_CP073939
Coordinates   462344..463468 (+) Length   374 a.a.
NCBI ID   WP_057108309.1    Uniprot ID   -
Organism   Escherichia coli strain MB53     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 457344..468468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU83_RS02260 (KFU83_02220) mscL 457470..457880 (-) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -
  KFU83_RS02265 (KFU83_02225) trkA 458010..459386 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  KFU83_RS02270 (KFU83_02230) rsmB 459408..460697 (-) 1290 WP_001411437.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  KFU83_RS02275 (KFU83_02235) fmt 460743..461690 (-) 948 WP_000004453.1 methionyl-tRNA formyltransferase -
  KFU83_RS02280 (KFU83_02240) def 461705..462214 (-) 510 WP_000114984.1 peptide deformylase -
  KFU83_RS02285 (KFU83_02245) dprA 462344..463468 (+) 1125 WP_057108309.1 DNA-protecting protein DprA Machinery gene
  KFU83_RS02290 (KFU83_02250) smg 463440..463913 (+) 474 WP_257188235.1 DUF494 family protein Smg -
  KFU83_RS02295 (KFU83_02255) yrdD 463942..464484 (+) 543 WP_001129723.1 type I DNA topoisomerase -
  KFU83_RS02300 (KFU83_02260) tsaC 464489..465061 (+) 573 WP_112914566.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  KFU83_RS02305 (KFU83_02265) aroE 465066..465884 (+) 819 WP_000451235.1 shikimate dehydrogenase -
  KFU83_RS02310 (KFU83_02270) yrdB 465881..466138 (+) 258 WP_001070567.1 DUF1488 domain-containing protein -
  KFU83_RS02315 (KFU83_02275) yrdA 466114..466668 (-) 555 WP_001286216.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 41013.00 Da        Isoelectric Point: 6.3125

>NTDB_id=488418 KFU83_RS02285 WP_057108309.1 462344..463468(+) (dprA) [Escherichia coli strain MB53]
MVDTEIWLRLMSISSLYGDEMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLATSLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=488418 KFU83_RS02285 WP_057108309.1 462344..463468(+) (dprA) [Escherichia coli strain MB53]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTACGGCGATGAAATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACTGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATTCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTAGGGAATGGACTTAATACTATTCATCCGCGTCGTCATGCCCGACTGGCTACCAGTTTGCT
TGAACAGGGTGGCGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGTTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCAGGACCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGCAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (WHD_DprA)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

47.967

98.663

0.473
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

49.355

82.888

0.409
  dprA Vibrio cholerae strain A1552

49.355

82.888

0.409
  dprA Haemophilus influenzae Rd KW20

45.104

90.107

0.406
  dprA Glaesserella parasuis strain SC1401

44.807

90.107

0.404
  dprA Legionella pneumophila strain ERS1305867

44.242

88.235

0.39