Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SBAL175_RS01880 Genome accession   NC_017571
Coordinates   418213..419739 (-) Length   508 a.a.
NCBI ID   WP_006083468.1    Uniprot ID   -
Organism   Shewanella baltica BA175     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 413213..424739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBAL175_RS01855 (Sbal175_0364) prpB 413742..414620 (-) 879 WP_006083473.1 methylisocitrate lyase -
  SBAL175_RS01860 (Sbal175_0365) - 414678..415445 (-) 768 WP_006083472.1 GntR family transcriptional regulator -
  SBAL175_RS01865 (Sbal175_0366) - 415746..416261 (+) 516 WP_037392728.1 DUF523 domain-containing protein -
  SBAL175_RS01870 (Sbal175_0367) - 416258..417193 (-) 936 WP_006083470.1 acyltransferase -
  SBAL175_RS01875 (Sbal175_0368) - 417207..418103 (-) 897 WP_006083469.1 acyltransferase -
  SBAL175_RS01880 (Sbal175_0369) comM 418213..419739 (-) 1527 WP_006083468.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SBAL175_RS01885 (Sbal175_0370) - 419954..421069 (+) 1116 WP_006083467.1 DUF1963 domain-containing protein -
  SBAL175_RS01890 (Sbal175_0371) - 421798..422826 (+) 1029 WP_006083466.1 ABC transporter substrate-binding protein -
  SBAL175_RS01895 (Sbal175_0372) - 422872..424671 (+) 1800 WP_006083465.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55450.84 Da        Isoelectric Point: 8.1069

>NTDB_id=48815 SBAL175_RS01880 WP_006083468.1 418213..419739(-) (comM) [Shewanella baltica BA175]
MAIACVNTRASCGVEAPQVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAVGILAASEQIPLNSLKNLEFVGELALSGHIRYCQGLLPAIIAAKRQDHTLILPLDNRHDAELVGYPNVLFGSHL
QSLAAYLQGQNQLPTLAPQLEWISQETPESHTCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLPA
LNYEEALEVAAIHSVAGLDIKPQHFLQRPFRSPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDSQHRSSPEQIQRYLSRLSGPFLDRFDLTIEVPKLPAGTLTQAA
PQTETSQDIAKRVKLARELQLARAGVLNSELTGKQLKRFSGLSDADLVFLEQSVVKLGLSVRSFHRIQRVARTIADLEQV
PNTERRHIAQALGYRAMDRLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=48815 SBAL175_RS01880 WP_006083468.1 418213..419739(-) (comM) [Shewanella baltica BA175]
ATGGCGATTGCCTGCGTCAATACCCGAGCCAGTTGTGGGGTCGAAGCGCCCCAAGTCACAGTTGAGGTGCATCTCAGTAA
CGGCTTACCAGCATTTAATCTAGTGGGATTACCCGAAGCGTCGGTGAAAGAAGCCCGCGAGCGGGTGCGCAGCGCGCTGA
TCAATGCAGGATTCGAGTTTCCGATGCGGCGGATAACCGTTAACCTTGCGCCAGCAGATTTACCTAAACAAGGTGGCCGC
TACGACTTACCCATAGCCGTAGGCATATTGGCCGCATCAGAACAAATCCCCCTTAATAGCCTAAAAAATCTCGAGTTTGT
CGGTGAACTGGCATTGTCTGGGCACATACGTTATTGCCAAGGATTATTACCGGCGATTATCGCCGCAAAGCGCCAAGACC
ATACCTTGATATTGCCGCTGGATAATCGCCACGATGCCGAGTTAGTCGGCTATCCCAATGTATTGTTTGGCTCGCACCTT
CAGAGTCTGGCCGCTTATTTACAGGGGCAAAATCAACTGCCGACGTTAGCGCCGCAATTAGAATGGATAAGCCAAGAGAC
GCCCGAGTCCCATACTTGCCTGAGCGATGTGATTGGCCAATATCAGGCCAAGCAAGCACTCGAAATTGCCGCGGCGGGAA
ACCATAACCTCCTGATGCTTGGCCCGCCAGGTACGGGCAAAACCATGCTTGCCAGTCGCATGATGGCGCTATTGCCCGCG
CTTAATTATGAGGAAGCATTAGAAGTAGCAGCAATTCATTCCGTTGCCGGACTCGACATTAAACCGCAGCATTTTTTACA
GCGACCCTTTCGCTCGCCACACCACACGAGTTCTTCGATTTCCCTCGTGGGCGGTGGCAGTATTCCCAAACCCGGTGAAA
TTTCCCTCGCCCACCGTGGCGTGCTGTTTTTAGATGAAGTGGCTGAATTTCCGCGTAAAGTCTTAGATTGCCTGCGCGAA
CCGATGGAAACCGGCGAAGTAGTGATTTCCCGCGCCGCCGCTAAGCTGACATTTTTGAGTCGCTTCCAATTAATCGCGGC
GATGAATCCCAGCCCGAGTGGCGATATCGATAGCCAACACAGATCGAGCCCAGAACAAATTCAGCGTTATCTTTCGCGGC
TTTCAGGCCCGTTTCTCGACCGTTTCGATTTAACCATTGAAGTCCCCAAACTCCCCGCGGGCACCTTAACTCAAGCCGCG
CCGCAAACAGAGACCAGCCAAGATATCGCCAAACGAGTGAAACTAGCGCGTGAGCTGCAACTCGCCCGCGCTGGCGTGCT
CAATAGTGAACTCACAGGGAAACAATTGAAACGCTTTAGCGGACTCAGTGACGCTGATTTAGTGTTTTTGGAGCAAAGCG
TGGTAAAGCTTGGCCTCTCGGTTCGCAGTTTTCATCGTATACAAAGAGTTGCGCGCACGATTGCCGATCTGGAACAAGTG
CCTAACACAGAACGCCGCCATATTGCCCAAGCACTGGGTTATCGCGCCATGGATAGATTACTCGCCCGCTTATCCCAGCA
ATATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.667

100

0.569
  comM Haemophilus influenzae Rd KW20

56.299

100

0.563
  comM Glaesserella parasuis strain SC1401

56.41

99.803

0.563
  comM Vibrio campbellii strain DS40M4

55.403

100

0.555
  comM Legionella pneumophila str. Paris

46.365

100

0.465
  comM Legionella pneumophila strain ERS1305867

46.365

100

0.465
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.952

97.638

0.429

Multiple sequence alignment