Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KEH54_RS02210 Genome accession   NZ_CP073768
Coordinates   468788..469912 (+) Length   374 a.a.
NCBI ID   WP_064670502.1    Uniprot ID   -
Organism   Escherichia coli strain SH19PTE6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 463788..474912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEH54_RS02185 (KEH54_02185) mscL 463914..464324 (-) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -
  KEH54_RS02190 (KEH54_02190) trkA 464454..465830 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  KEH54_RS02195 (KEH54_02195) rsmB 465852..467141 (-) 1290 WP_000744778.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  KEH54_RS02200 (KEH54_02200) fmt 467187..468134 (-) 948 WP_000004473.1 methionyl-tRNA formyltransferase -
  KEH54_RS02205 (KEH54_02205) def 468149..468658 (-) 510 WP_000114984.1 peptide deformylase -
  KEH54_RS02210 (KEH54_02210) dprA 468788..469912 (+) 1125 WP_064670502.1 DNA-protecting protein DprA Machinery gene
  KEH54_RS02215 (KEH54_02215) smg 469884..470357 (+) 474 WP_000460680.1 DUF494 family protein Smg -
  KEH54_RS02220 (KEH54_02220) yrdD 470386..470928 (+) 543 WP_001129722.1 type I DNA topoisomerase -
  KEH54_RS02225 (KEH54_02225) tsaC 470933..471505 (+) 573 WP_001301412.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  KEH54_RS02230 (KEH54_02230) aroE 471510..472328 (+) 819 WP_064670501.1 shikimate dehydrogenase -
  KEH54_RS02235 (KEH54_02235) yrdB 472325..472582 (+) 258 WP_001070563.1 DUF1488 domain-containing protein -
  KEH54_RS02240 (KEH54_02240) yrdA 472558..473112 (-) 555 WP_001286216.1 gamma carbonic anhydrase family protein -
  KEH54_RS02245 (KEH54_02245) - 473141..473365 (+) 225 WP_154205229.1 hypothetical protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40970.96 Da        Isoelectric Point: 6.3122

>NTDB_id=487930 KEH54_RS02210 WP_064670502.1 468788..469912(+) (dprA) [Escherichia coli strain SH19PTE6]
MVDTEIWLRLMSISSLYGDDMVRIAHWVAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYLGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLAASLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=487930 KEH54_RS02210 WP_064670502.1 468788..469912(+) (dprA) [Escherichia coli strain SH19PTE6]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGTATCAGCAGCTTGTACGGCGATGATATGGTCCGTATCGCTCACTG
GGTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCACGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATTCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCTCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTAGCGCATAAAGCAGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGTCATGCCCGACTGGCTGCCAGTCTGCT
TGAACAGGGGGGCGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGTAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGAGAAGTTTTTGCCTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGCAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (WHD_DprA)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

47.967

98.663

0.473
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

49.032

82.888

0.406
  dprA Vibrio cholerae strain A1552

49.032

82.888

0.406
  dprA Haemophilus influenzae Rd KW20

44.807

90.107

0.404
  dprA Glaesserella parasuis strain SC1401

44.51

90.107

0.401
  dprA Legionella pneumophila strain ERS1305867

43.939

88.235

0.388